Package index
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add_hazards()
add_hazards_()
- Add Hazards
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apply_af()
- Apply an Acceleration Factor
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apply_hr()
- Apply a Hazard Ratio
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apply_or()
- Apply an Odds Ratio
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apply_shift()
- Apply a time shift to a survival distribution
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calibrate_model()
- Calibrate Model Parameters
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use_cluster()
status_cluster()
close_cluster()
- Run
heemod
on a Cluster
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combine_probs()
- Combine Probabilities
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compute_surv()
- Evaluate Survival Distributions
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construct_part_surv_tib()
- construct a survival object from tabular specification
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define_calibration_fn()
- Define Calibration Function
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define_correlation()
define_correlation_()
- Define a Correlation Structure for Probabilistic Uncertainty Analysis
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define_dsa()
define_dsa_()
- Define a Sensitivity Analysis
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define_inflow()
define_inflow_()
- Define Inflow for a BIA
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define_init()
define_init_()
- Define Initial Counts
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define_parameters()
define_parameters_()
modify(<uneval_parameters>)
- Define Markov Model Parameters
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define_part_surv()
define_part_surv_()
- Define Partitioned Survival
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define_psa()
define_psa_()
- Define Parameters Distribution for Probabilistic Analysis
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define_starting_values()
define_starting_values_()
- Define Starting State Values
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define_state()
define_state_()
modify(<state>)
- Define a Markov Model State
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define_strategy()
define_strategy_()
- Define a Markov Model
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define_surv_dist()
- Define a Survival Distribution
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define_surv_fit()
- Define a Fitted Survival Model
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define_surv_spline()
- Define a Restricted Cubic Spline Survival Distribution
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define_surv_table()
- Define a survival distribution based on explicit survival probabilities
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define_transition()
define_transition_()
modify(<uneval_matrix>)
plot(<uneval_matrix>)
- Define Transition Matrix for Markov Model
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dispatch_strategy()
- Dispatch Values According to Strategy
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normal()
lognormal()
gamma()
binomial()
multinomial()
logitnormal()
beta()
triangle()
poisson()
define_distribution()
use_distribution()
- Probability Density Functions for Probabilistic Uncertainty Analysis
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export_savi()
- Export PSA Results for SAVI
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get_counts()
- Get State Membership Counts
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get_values()
- Get Strategy Values
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load_surv_models()
- Load a set of survival fits
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look_up()
- Look Up Values in a Data Frame
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modify()
- Modify Object
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part_survs_from_surv_inputs()
- Convert saved fits to partitioned survival objects
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plot(<dsa>)
- Plot Sensitivity Analysis
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plot(<psa>)
- Plot Results of Probabilistic Analysis
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plot(<run_model>)
- Plot Results of a Markov Model
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plot(<surv_object>)
- Plot general survival models
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rescale_prob()
prob_to_prob()
rate_to_prob()
or_to_prob()
rr_to_prob()
- Convenience Functions to Compute Probabilities
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reindent_transition()
- Reindent Transition Matrix
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rescale_discount_rate()
- Rescale Discount Rate
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run_bcea()
- Use the BCEA package
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run_dsa()
- Run Sensitivity Analysis
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run_model()
run_model_()
- Run Markov Model
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run_model_tabular()
- Run Analyses From Files
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run_psa()
- Run Probabilistic Uncertainty Analysis
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set_covariates()
set_covariates_()
- Set Covariates of a Survival Distribution
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summary(<run_model>)
- Summarise Markov Model Results
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summary(<surv_shift>)
- Summarize surv_shift objects
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update(<run_model>)
plot(<updated_model>)
- Run Model on New Data
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get_who_mr_memo()
get_who_mr()
- Use WHO Mortality Rate