Function reference • heemod

All functions

add_hazards() add_hazards_(): Add Hazards

apply_af(): Apply an Acceleration Factor

apply_hr(): Apply a Hazard Ratio

apply_or(): Apply an Odds Ratio

apply_shift(): Apply a time shift to a survival distribution

calibrate_model(): Calibrate Model Parameters

use_cluster() status_cluster() close_cluster(): Run heemod on a Cluster

combine_probs(): Combine Probabilities

compute_surv(): Evaluate Survival Distributions

construct_part_surv_tib(): construct a survival object from tabular specification

define_calibration_fn(): Define Calibration Function

define_correlation() define_correlation_(): Define a Correlation Structure for Probabilistic Uncertainty Analysis

define_dsa() define_dsa_(): Define a Sensitivity Analysis

define_inflow() define_inflow_(): Define Inflow for a BIA

define_init() define_init_(): Define Initial Counts

define_parameters() define_parameters_() modify(<uneval_parameters>): Define Markov Model Parameters

define_part_surv() define_part_surv_(): Define Partitioned Survival

define_psa() define_psa_(): Define Parameters Distribution for Probabilistic Analysis

define_starting_values() define_starting_values_(): Define Starting State Values

define_state() define_state_() modify(<state>): Define a Markov Model State

define_strategy() define_strategy_(): Define a Markov Model

define_surv_dist(): Define a Survival Distribution

define_surv_fit(): Define a Fitted Survival Model

define_surv_spline(): Define a Restricted Cubic Spline Survival Distribution

define_surv_table(): Define a survival distribution based on explicit survival probabilities

define_transition() define_transition_() modify(<uneval_matrix>) plot(<uneval_matrix>): Define Transition Matrix for Markov Model

dispatch_strategy(): Dispatch Values According to Strategy

normal() lognormal() gamma() binomial() multinomial() logitnormal() beta() triangle() poisson() define_distribution() beta() triangle() use_distribution(): Probability Density Functions for Probabilistic Uncertainty Analysis

export_savi(): Export PSA Results for SAVI

get_counts(): Get State Membership Counts

get_values(): Get Strategy Values

join() join_(): Project Beyond a Survival Distribution with Another

load_surv_models(): Load a set of survival fits

look_up(): Look Up Values in a Data Frame

mix() mix_(): Mix Two or More Survival Distributions

modify(): Modify Object

part_survs_from_surv_inputs(): Convert saved fits to partitioned survival objects

plot(<dsa>): Plot Sensitivity Analysis

plot(<psa>): Plot Results of Probabilistic Analysis

plot(<run_model>): Plot Results of a Markov Model

plot(<surv_object>): Plot general survival models

rescale_prob() prob_to_prob() rate_to_prob() or_to_prob() rr_to_prob(): Convenience Functions to Compute Probabilities

reindent_transition(): Reindent Transition Matrix

rescale_discount_rate(): Rescale Discount Rate

run_bcea(): Use the BCEA package

run_dsa(): Run Sensitivity Analysis

run_model() run_model_(): Run Markov Model

run_model_tabular(): Run Analyses From Files

run_psa(): Run Probabilistic Uncertainty Analysis

set_covariates() set_covariates_(): Set Covariates of a Survival Distribution

summary(<run_model>): Summarise Markov Model Results

summary(<surv_shift>): Summarize surv_shift objects

update(<run_model>) plot(<updated_model>): Run Model on New Data

get_who_mr_memo() get_who_mr(): Use WHO Mortality Rate