Data Management with FHIR
0.1.0 - ci-build
Data Management with FHIR - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
| Draft as of 2025-10-23 |
<StructureMap xmlns="http://hl7.org/fhir">
<id value="Q2FSL"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Narratif généré : StructureMap Q2FSL</b></p><a name="Q2FSL"> </a><a name="hcQ2FSL"> </a><pre class="fml">
<b>map</b><span style="color: navy"> "</span>https://interop.aphp.fr/ig/fhir/dm/StructureMap/Q2FSL<span style="color: navy">" = "</span>Q2FSL<span style="color: navy">"
</span><span style="color: navy">// </span><span style="color: green">Transforms QuestionnaireResponse based on Questionnaire Usage Variables socles into FHIR resources conforming to DM profiles</span>
<b>uses</b><span style="color: navy"> "</span><a href="http://hl7.org/fhir/R4/questionnaireresponse.html" title="QuestionnaireResponse">http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse</a><span style="color: navy">" </span><b>alias </b>QuestionnaireResponse <b>as </b><b>source</b>
<b>uses</b><span style="color: navy"> "</span><a href="http://hl7.org/fhir/R4/bundle.html" title="Bundle">http://hl7.org/fhir/StructureDefinition/Bundle</a><span style="color: navy">" </span><b>alias </b>Bundle <b>as </b><b>target</b>
<span style="color: navy">// </span><span style="color: green">Main entry point: Transform QuestionnaireResponse to Bundle</span>
<b>group </b>QuestionnaireResponseToBundle<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span><span style="color: navy"> : </span>QuestionnaireResponse, <b>target</b> <span style="color: maroon">bundle</span><span style="color: navy"> : </span>Bundle<span style="color: navy">)</span><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Initialize Bundle</span>
src<span style="color: navy"><b> -> </b></span>bundle.id = <b>uuid</b><span style="color: navy">(</span><span style="color: navy">)</span> <i>"bundleid"</i><span style="color: navy">;</span>
src<span style="color: navy"><b> -> </b></span>bundle.type = <span style="color: blue">'collection'</span> <i>"bundletype"</i><span style="color: navy">;</span>
src<span style="color: navy"><b> -> </b></span>bundle.timestamp = <span style="color: navy">(</span>now()<span style="color: navy">)</span> <i>"setTimestamp"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Create Patient resource</span>
src<span style="color: navy"><b> -> </b></span>bundle.entry<b> as </b><span style="color: maroon">patientEntry</span><b> then</b><span style="color: navy"> {
</span> src<span style="color: navy"><b> -> </b></span>patientEntry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Patient'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">patient</span><b> then</b><span style="color: navy"> {
</span> src<b> then </b>CreatePatient<span style="color: navy">(</span><span style="color: maroon">src</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">)</span> <i>"createpatient"</i><span style="color: navy">;</span>
src<span style="color: navy"><b> -> </b></span> patient.id<b> as </b><span style="color: maroon">patientId</span><span style="color: navy">, </span> patientEntry.fullUrl = <b>append</b><span style="color: navy">(</span><span style="color: blue">'urn:uuid:'</span><span style="color: navy">, </span><span style="color: maroon">patientId</span><span style="color: navy">)</span> <i>"setfullUrl"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Create Locations from geocoding data</span>
<span style="color: navy">// </span><span style="color: green">src then CreateLocations(src, patient, bundle) "create-locations";</span>
<span style="color: navy">// </span><span style="color: green">Create Encounters from PMSI data</span>
src<b> then </b>CreateEncounters<span style="color: navy">(</span><span style="color: maroon">src</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createencounters"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Create Laboratory Observations</span>
src<b> then </b>CreateLaboratoryObservations<span style="color: navy">(</span><span style="color: maroon">src</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createlabobservations"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Create Medication Requests</span>
src<b> then </b>CreateMedicationRequests<span style="color: navy">(</span><span style="color: maroon">src</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createmedicationrequests"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Create Medication Administrations</span>
src<b> then </b>CreateMedicationAdministrations<span style="color: navy">(</span><span style="color: maroon">src</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createmedicationadministrations"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Create Vital Sign Observations</span>
src<b> then </b>CreateVitalSignObservations<span style="color: navy">(</span><span style="color: maroon">src</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createvitalsigns"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"createpatientresource"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"patiententry"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><span style="color: navy">// </span><span style="color: green">Group: Create Patient from QuestionnaireResponse</span>
<b>group </b>CreatePatient<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span><span style="color: navy"> : </span>QuestionnaireResponse, <b>target</b> <span style="color: maroon">patient</span><span style="color: navy"> : </span>Patient<span style="color: navy">)</span><span style="color: navy"> {
</span> src<span style="color: navy"><b> -> </b></span>patient.id = <b>uuid</b><span style="color: navy">(</span><span style="color: navy">)</span> <i>"patientid"</i><span style="color: navy">;</span>
src<span style="color: navy"><b> -> </b></span>patient.meta = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Meta'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">meta</span><b> then</b><span style="color: navy"> {
</span> src<span style="color: navy"><b> -> </b></span>meta.profile = <span style="color: blue">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMPatient'</span> <i>"patientprofile"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"patientmeta"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Extract patient identity data from linkId 4647259356106 > 2958000860428</span>
src.item<b> as </b><span style="color: maroon">socioDemo</span><b> where </b>(linkId = '4647259356106')<b> then</b><span style="color: navy"> {
</span> socioDemo.item<b> as </b><span style="color: maroon">identity</span><b> where </b>(linkId = '2958000860428')<b> then</b><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Patient name (linkId 8605698058770 = family, 6214879623503 = given)</span>
identity<span style="color: navy"><b> -> </b></span>patient.name = <b>create</b><span style="color: navy">(</span><span style="color: blue">'HumanName'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">name</span><b> then</b><span style="color: navy"> {
</span> identity.item<b> as </b><span style="color: maroon">familyItem</span><b> where </b>(linkId = '8605698058770')<b> then</b><span style="color: navy"> {
</span> familyItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>name.family = <span style="color: navy">(</span>ans.valueString<span style="color: navy">)</span> <i>"setfamily"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractfamily"</i><span style="color: navy">;</span>
identity.item<b> as </b><span style="color: maroon">givenItem</span><b> where </b>(linkId = '6214879623503')<b> then</b><span style="color: navy"> {
</span> givenItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>name.given = <span style="color: navy">(</span>ans.valueString<span style="color: navy">)</span> <i>"setgiven"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractgiven"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setname"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">NIR identifier (linkId 5711960356160)</span>
identity.item<b> as </b><span style="color: maroon">nirItem</span><b> where </b>(linkId = '5711960356160')<b> then</b><span style="color: navy"> {
</span> nirItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>patient.identifier = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Identifier'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">nir</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>nir.system = <span style="color: blue">'urn:oid:1.2.250.1.213.1.4.8'</span> <i>"nirsystem"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>nir.value = <span style="color: navy">(</span>ans.valueString<span style="color: navy">)</span> <i>"nirvalue"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>nir.type = <b>cc</b><span style="color: navy">(</span><span style="color: blue">'http://interopsante.org/fhir/CodeSystem/fr-v2-0203'</span><span style="color: navy">, </span><span style="color: blue">'NIR'</span><span style="color: navy">)</span> <i>"nirtype"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setnir"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractnir"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">INS identifier (linkId 3764723550987)</span>
identity.item<b> as </b><span style="color: maroon">insItem</span><b> where </b>(linkId = '3764723550987')<b> then</b><span style="color: navy"> {
</span> insItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>patient.identifier = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Identifier'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ins</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>ins.system = <span style="color: blue">'urn:oid:1.2.250.1.213.1.4.10'</span> <i>"inssystem"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>ins.value = <span style="color: navy">(</span>ans.valueString<span style="color: navy">)</span> <i>"insvalue"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>ins.type = <b>cc</b><span style="color: navy">(</span><span style="color: blue">'http://interopsante.org/fhir/CodeSystem/fr-v2-0203'</span><span style="color: navy">, </span><span style="color: blue">'INS-C'</span><span style="color: navy">)</span> <i>"instype"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setins"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractins"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Birth date (linkId 5036133558154)</span>
identity.item<b> as </b><span style="color: maroon">birthItem</span><b> where </b>(linkId = '5036133558154')<b> then</b><span style="color: navy"> {
</span> birthItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>patient.birthDate = <span style="color: navy">(</span>ans.valueDate<span style="color: navy">)</span> <i>"setbirthdate"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractbirthdate"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Death date (linkId 5633552097315)</span>
identity.item<b> as </b><span style="color: maroon">deathItem</span><b> where </b>(linkId = '5633552097315')<b> then</b><span style="color: navy"> {
</span> deathItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>patient.deceased = <span style="color: navy">(</span>ans.valueDate<span style="color: navy">)</span> <i>"setdeceaseddate"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Death source (linkId 9098810065693)</span>
deathItem.item<b> as </b><span style="color: maroon">deathSource</span><b> where </b>(linkId = '9098810065693')<b> then</b><span style="color: navy"> {
</span> deathSource.answer<b> as </b><span style="color: maroon">sourceAns</span><span style="color: navy"><b> -> </b></span>patient.extension = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Extension'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ext</span><b> then</b><span style="color: navy"> {
</span> sourceAns<span style="color: navy"><b> -> </b></span>ext.url = <span style="color: blue">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/death-source'</span> <i>"deathsourceurl"</i><span style="color: navy">;</span>
sourceAns<span style="color: navy"><b> -> </b></span>ext.value = <span style="color: navy">(</span>sourceAns.valueCoding<span style="color: navy">)</span> <i>"deathsourcevalue"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setdeathsourceext"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractdeathsource"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractdeath"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Multiple birth rank (linkId 6931296968515)</span>
identity.item<b> as </b><span style="color: maroon">multipleItem</span><b> where </b>(linkId = '6931296968515')<b> then</b><span style="color: navy"> {
</span> multipleItem.answer<b> as </b><span style="color: maroon">ans</span><b> then</b><span style="color: navy"> {
</span> ans.valueInteger<b> as </b><span style="color: maroon">valueInteger</span><span style="color: navy"><b> -> </b></span>patient.multipleBirth = <span style="color: maroon">valueInteger</span> <i>"setmultiplebirth"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"navigatevalue"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractmultiplebirth"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"processidentity"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Gender from PMSI data (linkId 3894630481120 within 2825244231605)</span>
src.item<b> as </b><span style="color: maroon">pmsiGroup</span><b> where </b>(linkId = '2825244231605')<b> then</b><span style="color: navy"> {
</span> pmsiGroup.item<b> as </b><span style="color: maroon">sexItem</span><b> where </b>(linkId = '3894630481120')<b> then</b><span style="color: navy"> {
</span> sexItem.answer<b> as </b><span style="color: maroon">ans</span><b> then</b><span style="color: navy"> {
</span> ans.valueCoding<b> as </b><span style="color: maroon">valueCoding</span><span style="color: navy"><b> -> </b></span>patient.gender = <b>translate</b><span style="color: navy">(</span><span style="color: maroon">valueCoding</span><span style="color: navy">, </span><span style="color: blue">'https://interop.aphp.fr/ig/fhir/dm/ConceptMap/dpi-gender-2-hl7-gender'</span><span style="color: navy">, </span><span style="color: blue">'code'</span><span style="color: navy">)</span> <i>"setgender"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"valueCoding"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractgender"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Address from code géographique (linkId 2446369196222)</span>
pmsiGroup.item<b> as </b><span style="color: maroon">codeGeoItem</span><b> where </b>(linkId = '2446369196222')<b> then</b><span style="color: navy"> {
</span> codeGeoItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>patient.address = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Address'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">addr</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>addr.extension = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Extension'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ext</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>ext.url = <span style="color: blue">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/pmsi-code-geo'</span> <i>"codegeourl"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>ext.value = <span style="color: navy">(</span>ans.valueCoding<span style="color: navy">)</span> <i>"codegeovalue"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setcodegeoext"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setaddress"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractcodegeo"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractpmsidemographics"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"processsociodemographics"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><span style="color: navy">// </span><span style="color: green">Group: Create Locations from geocoding and IRIS data</span>
<b>group </b>CreateLocations<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span><span style="color: navy"> : </span>QuestionnaireResponse, <b>target</b> <span style="color: maroon">patient</span><span style="color: navy"> : </span>Patient, <b>target</b> <span style="color: maroon">bundle</span><span style="color: navy"> : </span>Bundle<span style="color: navy">)</span><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Extract geocoding data from linkId 4647259356106 > 5491974639955 > 3816475533472</span>
src.item<b> as </b><span style="color: maroon">socioDemo</span><b> where </b>(linkId = '4647259356106')<b> then</b><span style="color: navy"> {
</span> socioDemo.item<b> as </b><span style="color: maroon">environment</span><b> where </b>(linkId = '5491974639955')<b> then</b><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Geocoding locations (repeating group 3816475533472)</span>
environment.item<b> as </b><span style="color: maroon">geocodingItem</span><b> where </b>(linkId = '3816475533472')<span style="color: navy"><b> -> </b></span>bundle.entry<b> as </b><span style="color: maroon">locationEntry</span><b> then</b><span style="color: navy"> {
</span> geocodingItem<span style="color: navy"><b> -> </b></span>locationEntry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Location'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">location</span><b> then</b><span style="color: navy"> {
</span> geocodingItem<span style="color: navy"><b> -> </b></span>location.id = <b>uuid</b><span style="color: navy">(</span><span style="color: navy">)</span> <i>"locationid"</i><span style="color: navy">;</span>
geocodingItem<span style="color: navy"><b> -> </b></span>location.meta = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Meta'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">meta</span><b> then</b><span style="color: navy"> {
</span> geocodingItem<span style="color: navy"><b> -> </b></span>meta.profile = <span style="color: blue">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMLocation'</span> <i>"locationprofile"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"locationmeta"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Position with latitude and longitude</span>
geocodingItem<span style="color: navy"><b> -> </b></span>location.position = <b>create</b><span style="color: navy">(</span><span style="color: blue">'LocationPosition'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">pos</span><b> then</b><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Latitude (linkId 3709843054556)</span>
geocodingItem.item<b> as </b><span style="color: maroon">latItem</span><b> where </b>(linkId = '3709843054556')<b> then</b><span style="color: navy"> {
</span> latItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>pos.latitude = <span style="color: navy">(</span>ans.valueDecimal<span style="color: navy">)</span> <i>"setlatitude"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractlatitude"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Longitude (linkId 7651448032665)</span>
geocodingItem.item<b> as </b><span style="color: maroon">longItem</span><b> where </b>(linkId = '7651448032665')<b> then</b><span style="color: navy"> {
</span> longItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>pos.longitude = <span style="color: navy">(</span>ans.valueDecimal<span style="color: navy">)</span> <i>"setlongitude"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractlongitude"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setposition"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Extension for collection date (linkId 1185653257776)</span>
<span style="color: navy">// </span><span style="color: green">geocodingItem.item as dateItem where (linkId = '1185653257776') then { dateItem.answer as ans -> location.extension = create('Extension') as ext then { ans -> ext.url = 'http://hl7.org/fhir/StructureDefinition/data-collection-date' "date-url"; ans -> ext.value = (ans.valueDate) "date-value"; } "set-collection-date"; } "extract-collection-date";</span>
location<span style="color: navy"><b> -> </b></span>locationEntry.request<b> as </b><span style="color: maroon">request</span><b> then</b><span style="color: navy"> {
</span> location<span style="color: navy"><b> -> </b></span>request.method = <span style="color: blue">'POST'</span> <i>"setmethod"</i><span style="color: navy">;</span>
location<span style="color: navy"><b> -> </b></span>request.url = <span style="color: blue">'Location'</span> <i>"seturl"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setrequest"</i><span style="color: navy">;</span>
location.id<b> as </b><span style="color: maroon">locId</span><span style="color: navy"><b> -> </b></span>locationEntry.fullUrl = <b>append</b><span style="color: navy">(</span><span style="color: blue">'urn:uuid:'</span><span style="color: navy">, </span><span style="color: maroon">locId</span><span style="color: navy">)</span> <i>"setfullUrl"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"createlocation"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"geocodinglocationentry"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">IRIS locations (repeating item 7621032273792)</span>
environment.item<b> as </b><span style="color: maroon">irisItem</span><b> where </b>(linkId = '7621032273792')<b> then</b><span style="color: navy"> {
</span> irisItem.answer<b> as </b><span style="color: maroon">irisAnswer</span><span style="color: navy"><b> -> </b></span>bundle.entry<b> as </b><span style="color: maroon">locationEntry</span><b> then</b><span style="color: navy"> {
</span> irisAnswer<span style="color: navy"><b> -> </b></span>locationEntry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Location'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">location</span><b> then</b><span style="color: navy"> {
</span> irisAnswer<span style="color: navy"><b> -> </b></span>location.id = <b>uuid</b><span style="color: navy">(</span><span style="color: navy">)</span> <i>"locationid"</i><span style="color: navy">;</span>
irisAnswer<span style="color: navy"><b> -> </b></span>location.meta = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Meta'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">meta</span><b> then</b><span style="color: navy"> {
</span> irisAnswer<span style="color: navy"><b> -> </b></span>meta.profile = <span style="color: blue">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMLocation'</span> <i>"locationprofile"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"locationmeta"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">IRIS code as identifier</span>
irisAnswer<span style="color: navy"><b> -> </b></span>location.identifier = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Identifier'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">identifier</span><b> then</b><span style="color: navy"> {
</span> irisAnswer<span style="color: navy"><b> -> </b></span>identifier.system = <span style="color: blue">'urn:oid:2.16.840.1.113883.2.8.1.5.5'</span> <i>"irissystem"</i><span style="color: navy">;</span>
irisAnswer<span style="color: navy"><b> -> </b></span>identifier.value = <span style="color: navy">(</span>irisAnswer.valueCoding.code<span style="color: navy">)</span> <i>"irisvalue"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setirisidentifier"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Collection date from nested item (linkId 4999580038872)</span>
<span style="color: navy">// </span><span style="color: green">irisAnswer.item as dateItem where (linkId = '4999580038872') then { dateItem.answer as ans -> location.extension = create('Extension') as ext then { ans -> ext.url = 'http://hl7.org/fhir/StructureDefinition/data-collection-date' "date-url"; ans -> ext.value = (ans.valueDate) "date-value"; } "set-collection-date"; } "extract-iris-date";</span>
location<span style="color: navy"><b> -> </b></span>locationEntry.request<b> as </b><span style="color: maroon">request</span><b> then</b><span style="color: navy"> {
</span> location<span style="color: navy"><b> -> </b></span>request.method = <span style="color: blue">'POST'</span> <i>"setmethod"</i><span style="color: navy">;</span>
location<span style="color: navy"><b> -> </b></span>request.url = <span style="color: blue">'Location'</span> <i>"seturl"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setrequest"</i><span style="color: navy">;</span>
location.id<b> as </b><span style="color: maroon">locId</span><span style="color: navy"><b> -> </b></span>locationEntry.fullUrl = <b>append</b><span style="color: navy">(</span><span style="color: blue">'urn:uuid:'</span><span style="color: navy">, </span><span style="color: maroon">locId</span><span style="color: navy">)</span> <i>"setfullUrl"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"createirislocation"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"irislocationentry"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"processiris"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"processenvironment"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"processsociodemographicslocation"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><span style="color: navy">// </span><span style="color: green">Group: Create Encounters from PMSI data</span>
<b>group </b>CreateEncounters<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span><span style="color: navy"> : </span>QuestionnaireResponse, <b>target</b> <span style="color: maroon">patient</span><span style="color: navy"> : </span>Patient, <b>target</b> <span style="color: maroon">bundle</span><span style="color: navy"> : </span>Bundle<span style="color: navy">)</span><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">PMSI data group (linkId 2825244231605) - Note: This can repeat in the structure</span>
src.item<b> as </b><span style="color: maroon">pmsiItem</span><b> where </b>(linkId = '2825244231605')<span style="color: navy"><b> -> </b></span>bundle.entry<b> as </b><span style="color: maroon">encounterEntry</span><b> then</b><span style="color: navy"> {
</span> pmsiItem<span style="color: navy"><b> -> </b></span>encounterEntry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Encounter'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">encounter</span><b> then</b><span style="color: navy"> {
</span> pmsiItem<span style="color: navy"><b> -> </b></span>encounter.id = <b>uuid</b><span style="color: navy">(</span><span style="color: navy">)</span> <i>"encounterid"</i><span style="color: navy">;</span>
pmsiItem<span style="color: navy"><b> -> </b></span>encounter.meta = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Meta'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">meta</span><b> then</b><span style="color: navy"> {
</span> pmsiItem<span style="color: navy"><b> -> </b></span>meta.profile = <span style="color: blue">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMEncounter'</span> <i>"encounterprofile"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"encountermeta"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Link to patient</span>
src<span style="color: navy"><b> -> </b></span> encounter.subject = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Reference'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ref</span><span style="color: navy">, </span> patient.id<b> as </b><span style="color: maroon">patId</span><span style="color: navy">, </span> ref.reference = <b>append</b><span style="color: navy">(</span><span style="color: blue">'Patient/'</span><span style="color: navy">, </span><span style="color: maroon">patId</span><span style="color: navy">)</span> <i>"setsubject"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Encounter period (start: 5991443718282, end: 6114780320846)</span>
pmsiItem<span style="color: navy"><b> -> </b></span>encounter.period = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Period'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">period</span><b> then</b><span style="color: navy"> {
</span> pmsiItem.item<b> as </b><span style="color: maroon">startItem</span><b> where </b>(linkId = '5991443718282')<b> then</b><span style="color: navy"> {
</span> startItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>period.start = <span style="color: navy">(</span>ans.valueDate<span style="color: navy">)</span> <i>"setstart"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractstart"</i><span style="color: navy">;</span>
pmsiItem.item<b> as </b><span style="color: maroon">endItem</span><b> where </b>(linkId = '6114780320846')<b> then</b><span style="color: navy"> {
</span> endItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>period.end = <span style="color: navy">(</span>ans.valueDate<span style="color: navy">)</span> <i>"setend"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractend"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setperiod"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Mode d'entrée (linkId 6172398101212)</span>
pmsiItem.item<b> as </b><span style="color: maroon">modeInItem</span><b> where </b>(linkId = '6172398101212') <i>"extractmodein"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Mode de sortie (linkId 3354867075704)</span>
pmsiItem.item<b> as </b><span style="color: maroon">modeOutItem</span><b> where </b>(linkId = '3354867075704') <i>"extractmodeout"</i><span style="color: navy">;</span>
src<span style="color: navy"><b> -> </b></span> encounter.id<b> as </b><span style="color: maroon">encId</span><span style="color: navy">, </span> encounterEntry.fullUrl = <b>append</b><span style="color: navy">(</span><span style="color: blue">'urn:uuid:'</span><span style="color: navy">, </span><span style="color: maroon">encId</span><span style="color: navy">)</span> <i>"setfullUrl"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Create nested Conditions and Procedures</span>
pmsiItem<b> then </b>CreateConditions<span style="color: navy">(</span><span style="color: maroon">pmsiItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">encounter</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createconditions"</i><span style="color: navy">;</span>
pmsiItem<b> then </b>CreateProcedures<span style="color: navy">(</span><span style="color: maroon">pmsiItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">encounter</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createprocedures"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"createencounter"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"encounterentry"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><span style="color: navy">// </span><span style="color: green">Group: Create Conditions from nested diagnostics</span>
<b>group </b>CreateConditions<span style="color: navy">(</span><b>source</b> <span style="color: maroon">pmsiItem</span>, <b>target</b> <span style="color: maroon">patient</span><span style="color: navy"> : </span>Patient, <b>target</b> <span style="color: maroon">encounter</span><span style="color: navy"> : </span>Encounter, <b>target</b> <span style="color: maroon">bundle</span><span style="color: navy"> : </span>Bundle<span style="color: navy">)</span><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Diagnostics group (linkId 9391816419630) - can repeat</span>
pmsiItem.item<b> as </b><span style="color: maroon">diagGroup</span><b> where </b>(linkId = '9391816419630')<span style="color: navy"><b> -> </b></span>bundle.entry<b> as </b><span style="color: maroon">conditionEntry</span><b> then</b><span style="color: navy"> {
</span> diagGroup<span style="color: navy"><b> -> </b></span>conditionEntry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Condition'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">condition</span><b> then</b><span style="color: navy"> {
</span> diagGroup<span style="color: navy"><b> -> </b></span>condition.id = <b>uuid</b><span style="color: navy">(</span><span style="color: navy">)</span> <i>"conditionid"</i><span style="color: navy">;</span>
diagGroup<span style="color: navy"><b> -> </b></span>condition.meta = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Meta'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">meta</span><b> then</b><span style="color: navy"> {
</span> diagGroup<span style="color: navy"><b> -> </b></span>meta.profile = <span style="color: blue">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMCondition'</span> <i>"conditionprofile"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"conditionmeta"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Link to patient</span>
diagGroup<span style="color: navy"><b> -> </b></span> condition.subject = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Reference'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ref</span><span style="color: navy">, </span> patient.id<b> as </b><span style="color: maroon">patId</span><span style="color: navy">, </span> ref.reference = <b>append</b><span style="color: navy">(</span><span style="color: blue">'Patient/'</span><span style="color: navy">, </span><span style="color: maroon">patId</span><span style="color: navy">)</span> <i>"setsubject"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Link to encounter</span>
diagGroup<span style="color: navy"><b> -> </b></span> encounter.id<b> as </b><span style="color: maroon">encId</span><span style="color: navy">, </span> condition.encounter = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Reference'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ref</span><span style="color: navy">, </span> ref.reference = <b>append</b><span style="color: navy">(</span><span style="color: blue">'Encounter/'</span><span style="color: navy">, </span><span style="color: maroon">encId</span><span style="color: navy">)</span> <i>"setencounter"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Diagnostic code (linkId 5505101189372) - CIM-10</span>
diagGroup.item<b> as </b><span style="color: maroon">diagCodeItem</span><b> where </b>(linkId = '5505101189372')<b> then</b><span style="color: navy"> {
</span> diagCodeItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>condition.code = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">code</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>code.coding = <span style="color: navy">(</span>ans.valueCoding<span style="color: navy">)</span> <i>"setcoding"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setcode"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractdiagcode"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Type de diagnostic (linkId 6427586743735) - DP/DAS/DR</span>
diagGroup.item<b> as </b><span style="color: maroon">diagTypeItem</span><b> where </b>(linkId = '6427586743735')<b> then</b><span style="color: navy"> {
</span> diagTypeItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>condition.category = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">category</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>category.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">coding</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>coding.system = <span style="color: blue">'https://interop.aphp.fr/ig/fhir/dm/CodeSystem/pmsi-mco-diag-type'</span> <i>"diagtypesystem"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>coding.code = <span style="color: navy">(</span>ans.valueCoding.code<span style="color: navy">)</span> <i>"diagtypecode"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>coding.display = <span style="color: navy">(</span>ans.valueCoding.display<span style="color: navy">)</span> <i>"diagtypedisplay"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setcategorycoding"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setcategory"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractdiagtype"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Recorded date (linkId 7114466839467)</span>
diagGroup.item<b> as </b><span style="color: maroon">dateItem</span><b> where </b>(linkId = '7114466839467')<b> then</b><span style="color: navy"> {
</span> dateItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>condition.recordedDate = <span style="color: navy">(</span>ans.valueDate<span style="color: navy">)</span> <i>"setrecordeddate"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractrecordeddate"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"createcondition"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"conditionentry"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><span style="color: navy">// </span><span style="color: green">Group: Create Procedures from nested actes</span>
<b>group </b>CreateProcedures<span style="color: navy">(</span><b>source</b> <span style="color: maroon">pmsiItem</span>, <b>target</b> <span style="color: maroon">patient</span><span style="color: navy"> : </span>Patient, <b>target</b> <span style="color: maroon">encounter</span><span style="color: navy"> : </span>Encounter, <b>target</b> <span style="color: maroon">bundle</span><span style="color: navy"> : </span>Bundle<span style="color: navy">)</span><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Actes group (linkId 591926901726) - can repeat</span>
pmsiItem.item<b> as </b><span style="color: maroon">acteGroup</span><b> where </b>(linkId = '591926901726')<span style="color: navy"><b> -> </b></span>bundle.entry<b> as </b><span style="color: maroon">procedureEntry</span><b> then</b><span style="color: navy"> {
</span> acteGroup<span style="color: navy"><b> -> </b></span>procedureEntry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Procedure'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">procedure</span><b> then</b><span style="color: navy"> {
</span> acteGroup<span style="color: navy"><b> -> </b></span>procedure.id = <b>uuid</b><span style="color: navy">(</span><span style="color: navy">)</span> <i>"procedureid"</i><span style="color: navy">;</span>
acteGroup<span style="color: navy"><b> -> </b></span>procedure.meta = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Meta'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">meta</span><b> then</b><span style="color: navy"> {
</span> acteGroup<span style="color: navy"><b> -> </b></span>meta.profile = <span style="color: blue">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMProcedure'</span> <i>"procedureprofile"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"proceduremeta"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Link to patient</span>
acteGroup<span style="color: navy"><b> -> </b></span> procedure.subject = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Reference'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ref</span><span style="color: navy">, </span> patient.id<b> as </b><span style="color: maroon">patId</span><span style="color: navy">, </span> ref.reference = <b>append</b><span style="color: navy">(</span><span style="color: blue">'Patient/'</span><span style="color: navy">, </span><span style="color: maroon">patId</span><span style="color: navy">)</span> <i>"setsubject"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Link to encounter</span>
acteGroup<span style="color: navy"><b> -> </b></span> encounter.id<b> as </b><span style="color: maroon">encId</span><span style="color: navy">, </span> procedure.encounter = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Reference'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ref</span><span style="color: navy">, </span> ref.reference = <b>append</b><span style="color: navy">(</span><span style="color: blue">'Encounter/'</span><span style="color: navy">, </span><span style="color: maroon">encId</span><span style="color: navy">)</span> <i>"setencounter"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Acte code (linkId 7758110033600) - CCAM</span>
acteGroup.item<b> as </b><span style="color: maroon">acteCodeItem</span><b> where </b>(linkId = '7758110033600')<b> then</b><span style="color: navy"> {
</span> acteCodeItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>procedure.code = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">code</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>code.coding = <span style="color: navy">(</span>ans.valueCoding<span style="color: navy">)</span> <i>"setcoding"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setcode"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractactecode"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Date de l'acte (linkId 5066866286682)</span>
acteGroup.item<b> as </b><span style="color: maroon">dateItem</span><b> where </b>(linkId = '5066866286682')<b> then</b><span style="color: navy"> {
</span> dateItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>procedure.performed = <span style="color: navy">(</span>ans.valueDateTime<span style="color: navy">)</span> <i>"setperformed"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractperformeddate"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"createprocedure"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"procedureentry"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><span style="color: navy">// </span><span style="color: green">Group: Create Medication Requests</span>
<b>group </b>CreateMedicationRequests<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span><span style="color: navy"> : </span>QuestionnaireResponse, <b>target</b> <span style="color: maroon">patient</span><span style="color: navy"> : </span>Patient, <b>target</b> <span style="color: maroon">bundle</span><span style="color: navy"> : </span>Bundle<span style="color: navy">)</span><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Exposition médicamenteuse (linkId 817801935685)</span>
src.item<b> as </b><span style="color: maroon">medExpoGroup</span><b> where </b>(linkId = '817801935685')<b> then</b><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Médicament prescrit (linkId 156631794800) - repeating</span>
medExpoGroup.item<b> as </b><span style="color: maroon">prescribedGroup</span><b> where </b>(linkId = '156631794800')<span style="color: navy"><b> -> </b></span>bundle.entry<b> as </b><span style="color: maroon">medReqEntry</span><b> then</b><span style="color: navy"> {
</span> prescribedGroup<span style="color: navy"><b> -> </b></span>medReqEntry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'MedicationRequest'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">medReq</span><b> then</b><span style="color: navy"> {
</span> prescribedGroup<span style="color: navy"><b> -> </b></span>medReq.id = <b>uuid</b><span style="color: navy">(</span><span style="color: navy">)</span> <i>"medreqid"</i><span style="color: navy">;</span>
prescribedGroup<span style="color: navy"><b> -> </b></span>medReq.meta = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Meta'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">meta</span><b> then</b><span style="color: navy"> {
</span> prescribedGroup<span style="color: navy"><b> -> </b></span>meta.profile = <span style="color: blue">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMMedicationRequest'</span> <i>"medreqprofile"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"medreqmeta"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Link to patient</span>
prescribedGroup<span style="color: navy"><b> -> </b></span> medReq.subject = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Reference'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ref</span><span style="color: navy">, </span> patient.id<b> as </b><span style="color: maroon">patId</span><span style="color: navy">, </span> ref.reference = <b>append</b><span style="color: navy">(</span><span style="color: blue">'Patient/'</span><span style="color: navy">, </span><span style="color: maroon">patId</span><span style="color: navy">)</span> <i>"setsubject"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Status and intent</span>
prescribedGroup<span style="color: navy"><b> -> </b></span>medReq.status = <span style="color: blue">'active'</span> <i>"setstatus"</i><span style="color: navy">;</span>
prescribedGroup<span style="color: navy"><b> -> </b></span>medReq.intent = <span style="color: blue">'order'</span> <i>"setintent"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Create Medication resource and reference</span>
prescribedGroup<span style="color: navy"><b> -> </b></span>bundle.entry<b> as </b><span style="color: maroon">medEntry</span><b> then</b><span style="color: navy"> {
</span> prescribedGroup<span style="color: navy"><b> -> </b></span>medEntry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Medication'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">medication</span><b> then</b><span style="color: navy"> {
</span> prescribedGroup<span style="color: navy"><b> -> </b></span>medication.id = <b>uuid</b><span style="color: navy">(</span><span style="color: navy">)</span> <i>"medid"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">ATC code from nested items</span>
prescribedGroup.item<b> as </b><span style="color: maroon">atcItem</span><b> where </b>(linkId.contains('ATC'))<b> then</b><span style="color: navy"> {
</span> atcItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>medication.code = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">code</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>code.coding = <span style="color: navy">(</span>ans.valueCoding<span style="color: navy">)</span> <i>"setatccoding"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setmedcode"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractatc"</i><span style="color: navy">;</span>
prescribedGroup<span style="color: navy"><b> -> </b></span> medication.id<b> as </b><span style="color: maroon">medId</span><span style="color: navy">, </span> medEntry.fullUrl = <b>append</b><span style="color: navy">(</span><span style="color: blue">'urn:uuid:'</span><span style="color: navy">, </span><span style="color: maroon">medId</span><span style="color: navy">)</span> <i>"setfullUrl"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Link MedicationRequest to Medication</span>
prescribedGroup<span style="color: navy"><b> -> </b></span> medication.id<b> as </b><span style="color: maroon">medId</span><span style="color: navy">, </span> medReq.medication = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Reference'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ref</span><span style="color: navy">, </span> ref.reference = <b>append</b><span style="color: navy">(</span><span style="color: blue">'Medication/'</span><span style="color: navy">, </span><span style="color: maroon">medId</span><span style="color: navy">)</span> <i>"setmedicationreference"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"createmedication"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"medicationentry"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Dosage instructions</span>
prescribedGroup<span style="color: navy"><b> -> </b></span>medReq.dosageInstruction = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Dosage'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">dosage</span><b> then</b><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Route</span>
prescribedGroup.item<b> as </b><span style="color: maroon">routeItem</span><b> where </b>(linkId.contains('voie'))<b> then</b><span style="color: navy"> {
</span> routeItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>dosage.route = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">route</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>route.coding = <span style="color: navy">(</span>ans.valueCoding<span style="color: navy">)</span> <i>"setroutecoding"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setroute"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractroute"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Timing</span>
prescribedGroup.item<b> as </b><span style="color: maroon">timingItem</span><b> where </b>(linkId.contains('timing') or linkId.contains('fréquence'))<b> then</b><span style="color: navy"> {
</span> timingItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>dosage.timing = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Timing'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">timing</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>timing.repeat = <b>create</b><span style="color: navy">(</span><span style="color: blue">'TimingRepeat'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">repeat</span> <i>"settiming"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"settimingstructure"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extracttiming"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setdosage"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"createmedreq"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"medreqentry"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"processmedexpo"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><span style="color: navy">// </span><span style="color: green">Group: Create Medication Administrations</span>
<b>group </b>CreateMedicationAdministrations<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span><span style="color: navy"> : </span>QuestionnaireResponse, <b>target</b> <span style="color: maroon">patient</span><span style="color: navy"> : </span>Patient, <b>target</b> <span style="color: maroon">bundle</span><span style="color: navy"> : </span>Bundle<span style="color: navy">)</span><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Exposition médicamenteuse (linkId 817801935685)</span>
src.item<b> as </b><span style="color: maroon">medExpoGroup</span><b> where </b>(linkId = '817801935685')<b> then</b><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Médicament administré (linkId 266852453304) - repeating</span>
medExpoGroup.item<b> as </b><span style="color: maroon">adminGroup</span><b> where </b>(linkId = '266852453304')<span style="color: navy"><b> -> </b></span>bundle.entry<b> as </b><span style="color: maroon">medAdminEntry</span><b> then</b><span style="color: navy"> {
</span> adminGroup<span style="color: navy"><b> -> </b></span>medAdminEntry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'MedicationAdministration'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">medAdmin</span><b> then</b><span style="color: navy"> {
</span> adminGroup<span style="color: navy"><b> -> </b></span>medAdmin.id = <b>uuid</b><span style="color: navy">(</span><span style="color: navy">)</span> <i>"medadminid"</i><span style="color: navy">;</span>
adminGroup<span style="color: navy"><b> -> </b></span>medAdmin.meta = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Meta'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">meta</span><b> then</b><span style="color: navy"> {
</span> adminGroup<span style="color: navy"><b> -> </b></span>meta.profile = <span style="color: blue">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMMedicationAdministration'</span> <i>"medadminprofile"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"medadminmeta"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Link to patient</span>
adminGroup<span style="color: navy"><b> -> </b></span> medAdmin.subject = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Reference'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ref</span><span style="color: navy">, </span> patient.id<b> as </b><span style="color: maroon">patId</span><span style="color: navy">, </span> ref.reference = <b>append</b><span style="color: navy">(</span><span style="color: blue">'Patient/'</span><span style="color: navy">, </span><span style="color: maroon">patId</span><span style="color: navy">)</span> <i>"setsubject"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Status</span>
adminGroup<span style="color: navy"><b> -> </b></span>medAdmin.status = <span style="color: blue">'completed'</span> <i>"setstatus"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Create Medication resource and reference</span>
adminGroup<span style="color: navy"><b> -> </b></span>bundle.entry<b> as </b><span style="color: maroon">medEntry</span><b> then</b><span style="color: navy"> {
</span> adminGroup<span style="color: navy"><b> -> </b></span>medEntry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Medication'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">medication</span><b> then</b><span style="color: navy"> {
</span> adminGroup<span style="color: navy"><b> -> </b></span>medication.id = <b>uuid</b><span style="color: navy">(</span><span style="color: navy">)</span> <i>"medid"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">ATC code from nested items</span>
adminGroup.item<b> as </b><span style="color: maroon">atcItem</span><b> where </b>(linkId.contains('ATC'))<b> then</b><span style="color: navy"> {
</span> atcItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>medication.code = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">code</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>code.coding = <span style="color: navy">(</span>ans.valueCoding<span style="color: navy">)</span> <i>"setatccoding"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setmedcode"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractatc"</i><span style="color: navy">;</span>
adminGroup<span style="color: navy"><b> -> </b></span> medication.id<b> as </b><span style="color: maroon">medId</span><span style="color: navy">, </span> medEntry.fullUrl = <b>append</b><span style="color: navy">(</span><span style="color: blue">'Medication/'</span><span style="color: navy">, </span><span style="color: maroon">medId</span><span style="color: navy">)</span> <i>"setfullUrl"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Link MedicationAdministration to Medication</span>
adminGroup<span style="color: navy"><b> -> </b></span> medication.id<b> as </b><span style="color: maroon">medId</span><span style="color: navy">, </span> medAdmin.medication = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Reference'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ref</span><span style="color: navy">, </span> ref.reference = <b>append</b><span style="color: navy">(</span><span style="color: blue">'urn:uuid:'</span><span style="color: navy">, </span><span style="color: maroon">medId</span><span style="color: navy">)</span> <i>"setmedicationreference"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"createmedication"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"medicationentry"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Effective period</span>
adminGroup<span style="color: navy"><b> -> </b></span>medAdmin.effective = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Period'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">period</span><b> then</b><span style="color: navy"> {
</span> adminGroup.item<b> as </b><span style="color: maroon">startItem</span><b> where </b>(linkId.contains('début'))<b> then</b><span style="color: navy"> {
</span> startItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>period.start = <span style="color: navy">(</span>ans.valueDateTime<span style="color: navy">)</span> <i>"setstart"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractstart"</i><span style="color: navy">;</span>
adminGroup.item<b> as </b><span style="color: maroon">endItem</span><b> where </b>(linkId.contains('fin'))<b> then</b><span style="color: navy"> {
</span> endItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>period.end = <span style="color: navy">(</span>ans.valueDateTime<span style="color: navy">)</span> <i>"setend"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractend"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"seteffective"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Dosage</span>
adminGroup<span style="color: navy"><b> -> </b></span>medAdmin.dosage = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Dosage'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">dosage</span><b> then</b><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Route</span>
adminGroup.item<b> as </b><span style="color: maroon">routeItem</span><b> where </b>(linkId.contains('voie'))<b> then</b><span style="color: navy"> {
</span> routeItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>dosage.route = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">route</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>route.coding = <span style="color: navy">(</span>ans.valueCoding<span style="color: navy">)</span> <i>"setroutecoding"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setroute"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractroute"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Dose</span>
adminGroup.item<b> as </b><span style="color: maroon">doseItem</span><b> where </b>(linkId.contains('dose'))<b> then</b><span style="color: navy"> {
</span> doseItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>dosage.dose = <span style="color: navy">(</span>ans.valueQuantity<span style="color: navy">)</span> <i>"setdose"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractdose"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setdosage"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"createmedadmin"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"medadminentry"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"processmedexpoadmin"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><span style="color: navy">// </span><span style="color: green">Group: Create Vital Sign Observations</span>
<b>group </b>CreateVitalSignObservations<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span><span style="color: navy"> : </span>QuestionnaireResponse, <b>target</b> <span style="color: maroon">patient</span><span style="color: navy"> : </span>Patient, <b>target</b> <span style="color: maroon">bundle</span><span style="color: navy"> : </span>Bundle<span style="color: navy">)</span><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Examen clinique (linkId 214880328197)</span>
src.item<b> as </b><span style="color: maroon">examGroup</span><b> where </b>(linkId = '214880328197')<b> then</b><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Dossier de soins (linkId 305831246173) - repeating</span>
examGroup.item<b> as </b><span style="color: maroon">dossierGroup</span><b> where </b>(linkId = '305831246173')<b> then</b><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Height (linkId 4846902346416)</span>
dossierGroup.item<b> as </b><span style="color: maroon">heightItem</span><b> where </b>(linkId = '4846902346416')<b> then</b><span style="color: navy"> {
</span> heightItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle.entry<b> as </b><span style="color: maroon">obsEntry</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>obsEntry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Observation'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">obs</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>obs.id = <b>uuid</b><span style="color: navy">(</span><span style="color: navy">)</span> <i>"obsid"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span> obs.id<b> as </b><span style="color: maroon">obsId</span><span style="color: navy">, </span> obsEntry.fullUrl = <b>append</b><span style="color: navy">(</span><span style="color: blue">'urn:uuid:'</span><span style="color: navy">, </span><span style="color: maroon">obsId</span><span style="color: navy">)</span> <i>"setfullUrl"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>obs.meta = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Meta'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">meta</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>meta.profile = <span style="color: blue">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMObservationBodyHeight'</span> <i>"obsprofile"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"obsmeta"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>obs.status = <span style="color: blue">'final'</span> <i>"obsstatus"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>obs.category = <b>cc</b><span style="color: navy">(</span><span style="color: blue">'http://terminology.hl7.org/CodeSystem/observation-category'</span><span style="color: navy">, </span><span style="color: blue">'vital-signs'</span><span style="color: navy">)</span> <i>"obscategory"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>obs.code = <b>cc</b><span style="color: navy">(</span><span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span><span style="color: blue">'8302-2'</span><span style="color: navy">, </span><span style="color: blue">'Body height'</span><span style="color: navy">)</span> <i>"obscode"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Link to patient</span>
ans<span style="color: navy"><b> -> </b></span> obs.subject = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Reference'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ref</span><span style="color: navy">, </span> patient.id<b> as </b><span style="color: maroon">patId</span><span style="color: navy">, </span> ref.reference = <b>append</b><span style="color: navy">(</span><span style="color: blue">'Patient/'</span><span style="color: navy">, </span><span style="color: maroon">patId</span><span style="color: navy">)</span> <i>"setsubject"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Value</span>
ans<span style="color: navy"><b> -> </b></span>obs.value = <span style="color: navy">(</span>ans.valueQuantity<span style="color: navy">)</span> <i>"setvalue"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Effective date from nested item</span>
heightItem.item<b> as </b><span style="color: maroon">dateItem</span><b> where </b>(linkId.contains('Date'))<b> then</b><span style="color: navy"> {
</span> dateItem.answer<b> as </b><span style="color: maroon">dateAns</span><span style="color: navy"><b> -> </b></span>obs.effective = <span style="color: navy">(</span>dateAns.valueDate<span style="color: navy">)</span> <i>"seteffective"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extracteffective"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"createheightobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"heightobsentry"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractheight"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Weight (linkId 451513217936)</span>
dossierGroup.item<b> as </b><span style="color: maroon">weightItem</span><b> where </b>(linkId = '451513217936')<b> then</b><span style="color: navy"> {
</span> weightItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle.entry<b> as </b><span style="color: maroon">obsEntry</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>obsEntry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Observation'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">obs</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>obs.id = <b>uuid</b><span style="color: navy">(</span><span style="color: navy">)</span> <i>"obsid"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span> obs.id<b> as </b><span style="color: maroon">obsId</span><span style="color: navy">, </span> obsEntry.fullUrl = <b>append</b><span style="color: navy">(</span><span style="color: blue">'urn:uuid:'</span><span style="color: navy">, </span><span style="color: maroon">obsId</span><span style="color: navy">)</span> <i>"setfullUrl"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>obs.meta = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Meta'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">meta</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>meta.profile = <span style="color: blue">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMObservationBodyWeight'</span> <i>"obsprofile"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"obsmeta"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>obs.status = <span style="color: blue">'final'</span> <i>"obsstatus"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>obs.category = <b>cc</b><span style="color: navy">(</span><span style="color: blue">'http://terminology.hl7.org/CodeSystem/observation-category'</span><span style="color: navy">, </span><span style="color: blue">'vital-signs'</span><span style="color: navy">)</span> <i>"obscategory"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>obs.code = <b>cc</b><span style="color: navy">(</span><span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span><span style="color: blue">'29463-7'</span><span style="color: navy">, </span><span style="color: blue">'Body weight'</span><span style="color: navy">)</span> <i>"obscode"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Link to patient</span>
ans<span style="color: navy"><b> -> </b></span> obs.subject = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Reference'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ref</span><span style="color: navy">, </span> patient.id<b> as </b><span style="color: maroon">patId</span><span style="color: navy">, </span> ref.reference = <b>append</b><span style="color: navy">(</span><span style="color: blue">'Patient/'</span><span style="color: navy">, </span><span style="color: maroon">patId</span><span style="color: navy">)</span> <i>"setsubject"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Value</span>
ans<span style="color: navy"><b> -> </b></span>obs.value = <span style="color: navy">(</span>ans.valueQuantity<span style="color: navy">)</span> <i>"setvalue"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Effective date from nested item</span>
weightItem.item<b> as </b><span style="color: maroon">dateItem</span><b> where </b>(linkId.contains('Date'))<b> then</b><span style="color: navy"> {
</span> dateItem.answer<b> as </b><span style="color: maroon">dateAns</span><span style="color: navy"><b> -> </b></span>obs.effective = <span style="color: navy">(</span>dateAns.valueDate<span style="color: navy">)</span> <i>"seteffective"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extracteffective"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"createweightobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"weightobsentry"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractweight"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Blood Pressure - need both systolic and diastolic</span>
dossierGroup.item<b> as </b><span style="color: maroon">sysItem</span><b> where </b>(linkId = '4160905247955')<b> then</b><span style="color: navy"> {
</span> sysItem.answer<b> as </b><span style="color: maroon">sysAns</span><b> then</b><span style="color: navy"> {
</span> dossierGroup.item<b> as </b><span style="color: maroon">diaItem</span><b> where </b>(linkId = '848797127998')<b> then</b><span style="color: navy"> {
</span> diaItem.answer<b> as </b><span style="color: maroon">diaAns</span><span style="color: navy"><b> -> </b></span>bundle.entry<b> as </b><span style="color: maroon">obsEntry</span><b> then</b><span style="color: navy"> {
</span> sysAns<span style="color: navy"><b> -> </b></span>obsEntry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Observation'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">obs</span><b> then</b><span style="color: navy"> {
</span> sysAns<span style="color: navy"><b> -> </b></span>obs.id = <b>uuid</b><span style="color: navy">(</span><span style="color: navy">)</span> <i>"obsid"</i><span style="color: navy">;</span>
sysAns<span style="color: navy"><b> -> </b></span> obs.id<b> as </b><span style="color: maroon">obsId</span><span style="color: navy">, </span> obsEntry.fullUrl = <b>append</b><span style="color: navy">(</span><span style="color: blue">'urn:uuid:'</span><span style="color: navy">, </span><span style="color: maroon">obsId</span><span style="color: navy">)</span> <i>"setfullUrl"</i><span style="color: navy">;</span>
sysAns<span style="color: navy"><b> -> </b></span>obs.meta = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Meta'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">meta</span><b> then</b><span style="color: navy"> {
</span> sysAns<span style="color: navy"><b> -> </b></span>meta.profile = <span style="color: blue">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMObservationBloodPressure'</span> <i>"obsprofile"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"obsmeta"</i><span style="color: navy">;</span>
sysAns<span style="color: navy"><b> -> </b></span>obs.status = <span style="color: blue">'final'</span> <i>"obsstatus"</i><span style="color: navy">;</span>
sysAns<span style="color: navy"><b> -> </b></span>obs.category = <b>cc</b><span style="color: navy">(</span><span style="color: blue">'http://terminology.hl7.org/CodeSystem/observation-category'</span><span style="color: navy">, </span><span style="color: blue">'vital-signs'</span><span style="color: navy">)</span> <i>"obscategory"</i><span style="color: navy">;</span>
sysAns<span style="color: navy"><b> -> </b></span>obs.code = <b>cc</b><span style="color: navy">(</span><span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span><span style="color: blue">'85354-9'</span><span style="color: navy">, </span><span style="color: blue">'Blood pressure panel'</span><span style="color: navy">)</span> <i>"obscode"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Link to patient</span>
sysAns<span style="color: navy"><b> -> </b></span> obs.subject = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Reference'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ref</span><span style="color: navy">, </span> patient.id<b> as </b><span style="color: maroon">patId</span><span style="color: navy">, </span> ref.reference = <b>append</b><span style="color: navy">(</span><span style="color: blue">'Patient/'</span><span style="color: navy">, </span><span style="color: maroon">patId</span><span style="color: navy">)</span> <i>"setsubject"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Systolic component</span>
sysAns<span style="color: navy"><b> -> </b></span>obs.component = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Observation'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">sysComp</span><b> then</b><span style="color: navy"> {
</span> sysAns<span style="color: navy"><b> -> </b></span>sysComp.code = <b>cc</b><span style="color: navy">(</span><span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span><span style="color: blue">'8480-6'</span><span style="color: navy">, </span><span style="color: blue">'Systolic blood pressure'</span><span style="color: navy">)</span> <i>"syscode"</i><span style="color: navy">;</span>
sysAns<span style="color: navy"><b> -> </b></span>sysComp.value = <span style="color: navy">(</span>sysAns.valueQuantity<span style="color: navy">)</span> <i>"sysvalue"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setsystolic"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Diastolic component</span>
diaAns<span style="color: navy"><b> -> </b></span>obs.component = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Observation'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">diaComp</span><b> then</b><span style="color: navy"> {
</span> diaAns<span style="color: navy"><b> -> </b></span>diaComp.code = <b>cc</b><span style="color: navy">(</span><span style="color: blue">'http://loinc.org'</span><span style="color: navy">, </span><span style="color: blue">'8462-4'</span><span style="color: navy">, </span><span style="color: blue">'Diastolic blood pressure'</span><span style="color: navy">)</span> <i>"diacode"</i><span style="color: navy">;</span>
diaAns<span style="color: navy"><b> -> </b></span>diaComp.value = <span style="color: navy">(</span>diaAns.valueQuantity<span style="color: navy">)</span> <i>"diavalue"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setdiastolic"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Effective date from nested item</span>
sysItem.item<b> as </b><span style="color: maroon">dateItem</span><b> where </b>(linkId.contains('Date'))<b> then</b><span style="color: navy"> {
</span> dateItem.answer<b> as </b><span style="color: maroon">dateAns</span><span style="color: navy"><b> -> </b></span>obs.effective = <span style="color: navy">(</span>dateAns.valueDate<span style="color: navy">)</span> <i>"seteffective"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extracteffective"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"createbpobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"bpobsentr"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractdiastolic"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"processsystolic"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractbloodpressure"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"processdossier"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"processexam"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><span style="color: navy">// </span><span style="color: green">Group: Create Laboratory Observations</span>
<b>group </b>CreateLaboratoryObservations<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span><span style="color: navy"> : </span>QuestionnaireResponse, <b>target</b> <span style="color: maroon">patient</span><span style="color: navy"> : </span>Patient, <b>target</b> <span style="color: maroon">bundle</span><span style="color: navy"> : </span>Bundle<span style="color: navy">)</span><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Biologie group (linkId 7702944131447)</span>
src.item<b> as </b><span style="color: maroon">bioGroup</span><b> where </b>(linkId = '7702944131447')<b> then</b><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Fonction rénale (linkId 5241323453538)</span>
bioGroup.item<b> as </b><span style="color: maroon">renalGroup</span><b> where </b>(linkId = '5241323453538')<b> then</b><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Urée (linkId 7169026818760)</span>
renalGroup.item<b> as </b><span style="color: maroon">ureaItem</span><b> where </b>(linkId = '7169026818760')<b> then</b><span style="color: navy"> {
</span> ureaItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">ureaItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createureaobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extracturea"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Créatininémie (linkId 500408205043)</span>
renalGroup.item<b> as </b><span style="color: maroon">creatItem</span><b> where </b>(linkId = '500408205043')<b> then</b><span style="color: navy"> {
</span> creatItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">creatItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createcreatobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractcreat"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">DFG (linkId 786621340679)</span>
renalGroup.item<b> as </b><span style="color: maroon">dfgItem</span><b> where </b>(linkId = '786621340679')<b> then</b><span style="color: navy"> {
</span> dfgItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">dfgItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createdfgobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractdfg"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"processrenal"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Hémogramme (linkId 419282985970)</span>
bioGroup.item<b> as </b><span style="color: maroon">hemoGroup</span><b> where </b>(linkId = '419282985970')<b> then</b><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Leucocytes (linkId 210077225604)</span>
hemoGroup.item<b> as </b><span style="color: maroon">leukoItem</span><b> where </b>(linkId = '210077225604')<b> then</b><span style="color: navy"> {
</span> leukoItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">leukoItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createleukoobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractleuko"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Hémoglobine (linkId 304159088493)</span>
hemoGroup.item<b> as </b><span style="color: maroon">hemoItem</span><b> where </b>(linkId = '304159088493')<b> then</b><span style="color: navy"> {
</span> hemoItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">hemoItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createhemoobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extracthemo"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Hématocrite (linkId 5687959006070)</span>
hemoGroup.item<b> as </b><span style="color: maroon">hematItem</span><b> where </b>(linkId = '5687959006070')<b> then</b><span style="color: navy"> {
</span> hematItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">hematItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createhematobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extracthemat"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Erythrocytes (linkId 8697447896867)</span>
hemoGroup.item<b> as </b><span style="color: maroon">eryItem</span><b> where </b>(linkId = '8697447896867')<b> then</b><span style="color: navy"> {
</span> eryItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">eryItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createeryobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractery"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">VGM (linkId 5584978899134)</span>
hemoGroup.item<b> as </b><span style="color: maroon">vgmItem</span><b> where </b>(linkId = '5584978899134')<b> then</b><span style="color: navy"> {
</span> vgmItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">vgmItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createvgmobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractvgm"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Plaquettes (linkId 2881119993430)</span>
hemoGroup.item<b> as </b><span style="color: maroon">platItem</span><b> where </b>(linkId = '2881119993430')<b> then</b><span style="color: navy"> {
</span> platItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">platItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createplatobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractplat"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Neutrophiles (linkId 7408951746270)</span>
hemoGroup.item<b> as </b><span style="color: maroon">neutItem</span><b> where </b>(linkId = '7408951746270')<b> then</b><span style="color: navy"> {
</span> neutItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">neutItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createneutobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractneut"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Lymphocytes (linkId 809808816195)</span>
hemoGroup.item<b> as </b><span style="color: maroon">lymphItem</span><b> where </b>(linkId = '809808816195')<b> then</b><span style="color: navy"> {
</span> lymphItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">lymphItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createlymphobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractlymph"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Eosinophiles (linkId 6451887990893)</span>
hemoGroup.item<b> as </b><span style="color: maroon">eosiItem</span><b> where </b>(linkId = '6451887990893')<b> then</b><span style="color: navy"> {
</span> eosiItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">eosiItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createeosiobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extracteosi"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Monocytes (linkId 7935935816936)</span>
hemoGroup.item<b> as </b><span style="color: maroon">monoItem</span><b> where </b>(linkId = '7935935816936')<b> then</b><span style="color: navy"> {
</span> monoItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">monoItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createmonoobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractmono"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">TP (linkId 2055949655770)</span>
hemoGroup.item<b> as </b><span style="color: maroon">tpItem</span><b> where </b>(linkId = '2055949655770')<b> then</b><span style="color: navy"> {
</span> tpItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">tpItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createtpobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extracttp"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">TCA (linkId 2527095476817)</span>
hemoGroup.item<b> as </b><span style="color: maroon">tcaItem</span><b> where </b>(linkId = '2527095476817')<b> then</b><span style="color: navy"> {
</span> tcaItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">tcaItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createtcaobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extracttca"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"processhemo"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Bilan hépatique (linkId 3893612773040)</span>
bioGroup.item<b> as </b><span style="color: maroon">liverGroup</span><b> where </b>(linkId = '3893612773040')<b> then</b><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">ASAT (linkId 3028330976100)</span>
liverGroup.item<b> as </b><span style="color: maroon">asatItem</span><b> where </b>(linkId = '3028330976100')<b> then</b><span style="color: navy"> {
</span> asatItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">asatItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createasatobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractasat"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">ALAT (linkId 8486813893880)</span>
liverGroup.item<b> as </b><span style="color: maroon">alatItem</span><b> where </b>(linkId = '8486813893880')<b> then</b><span style="color: navy"> {
</span> alatItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">alatItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createalatobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractalat"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">GGT (linkId 3663296044037)</span>
liverGroup.item<b> as </b><span style="color: maroon">ggtItem</span><b> where </b>(linkId = '3663296044037')<b> then</b><span style="color: navy"> {
</span> ggtItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">ggtItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createggtobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractggt"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">PAL (linkId 2690026606933)</span>
liverGroup.item<b> as </b><span style="color: maroon">palItem</span><b> where </b>(linkId = '2690026606933')<b> then</b><span style="color: navy"> {
</span> palItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">palItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createpalobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractpal"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Bilirubine totale (linkId 9068831071023)</span>
liverGroup.item<b> as </b><span style="color: maroon">bilTotItem</span><b> where </b>(linkId = '9068831071023')<b> then</b><span style="color: navy"> {
</span> bilTotItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">bilTotItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createbiltotobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractbiltot"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Bilirubine conjuguée (linkId 8893717988787)</span>
liverGroup.item<b> as </b><span style="color: maroon">bilConjItem</span><b> where </b>(linkId = '8893717988787')<b> then</b><span style="color: navy"> {
</span> bilConjItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">bilConjItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createbilconjobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractbilconj"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"processliver"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Métabolisme glucidique (linkId 8929068894076)</span>
bioGroup.item<b> as </b><span style="color: maroon">glucoseGroup</span><b> where </b>(linkId = '8929068894076')<b> then</b><span style="color: navy"> {
</span> <span style="color: navy">// </span><span style="color: green">Glycémie à jeun (linkId 8193929027997)</span>
glucoseGroup.item<b> as </b><span style="color: maroon">glycItem</span><b> where </b>(linkId = '8193929027997')<b> then</b><span style="color: navy"> {
</span> glycItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">glycItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createglycobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractglyc"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">HbA1c (linkId 7063892830923)</span>
glucoseGroup.item<b> as </b><span style="color: maroon">hba1cItem</span><b> where </b>(linkId = '7063892830923')<b> then</b><span style="color: navy"> {
</span> hba1cItem.answer<b> as </b><span style="color: maroon">ans</span><span style="color: navy"><b> -> </b></span>bundle<b> then </b>CreateLabObservation<span style="color: navy">(</span><span style="color: maroon">ans</span><span style="color: navy">, </span><span style="color: maroon">hba1cItem</span><span style="color: navy">, </span><span style="color: maroon">patient</span><span style="color: navy">, </span><span style="color: maroon">bundle</span><span style="color: navy">)</span> <i>"createhba1cobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extracthba1c"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"processglucose"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"processbiology"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span><span style="color: navy">// </span><span style="color: green">Helper: Create a single Laboratory Observation</span>
<b>group </b>CreateLabObservation<span style="color: navy">(</span><b>source</b> <span style="color: maroon">ans</span>, <b>source</b> <span style="color: maroon">parentItem</span>, <b>target</b> <span style="color: maroon">patient</span><span style="color: navy"> : </span>Patient, <b>target</b> <span style="color: maroon">bundle</span><span style="color: navy"> : </span>Bundle<span style="color: navy">)</span><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>bundle.entry<b> as </b><span style="color: maroon">obsEntry</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>obsEntry.resource = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Observation'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">obs</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>obs.id = <b>uuid</b><span style="color: navy">(</span><span style="color: navy">)</span> <i>"obsid"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span> obs.id<b> as </b><span style="color: maroon">obsId</span><span style="color: navy">, </span> obsEntry.fullUrl = <b>append</b><span style="color: navy">(</span><span style="color: blue">'urn:uuid:'</span><span style="color: navy">, </span><span style="color: maroon">obsId</span><span style="color: navy">)</span> <i>"setfullUrl"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>obs.meta = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Meta'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">meta</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>meta.profile = <span style="color: blue">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/dm-observation-laboratory-generic'</span> <i>"obsprofile"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"obsmeta"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Status</span>
ans<span style="color: navy"><b> -> </b></span>obs.status = <span style="color: blue">'final'</span> <i>"obsstatus"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Category</span>
ans<span style="color: navy"><b> -> </b></span>obs.category = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">cat</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>cat.coding = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Coding'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">coding</span><b> then</b><span style="color: navy"> {
</span> ans<span style="color: navy"><b> -> </b></span>coding.system = <span style="color: blue">'http://terminology.hl7.org/CodeSystem/observation-category'</span> <i>"catsystem"</i><span style="color: navy">;</span>
ans<span style="color: navy"><b> -> </b></span>coding.code = <span style="color: blue">'laboratory'</span> <i>"catcode"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setcategorycoding"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setcategory"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Link to patient</span>
ans<span style="color: navy"><b> -> </b></span> obs.subject = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Reference'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">ref</span><span style="color: navy">, </span> patient.id<b> as </b><span style="color: maroon">patId</span><span style="color: navy">, </span> ref.reference = <b>append</b><span style="color: navy">(</span><span style="color: blue">'Patient/'</span><span style="color: navy">, </span><span style="color: maroon">patId</span><span style="color: navy">)</span> <i>"setsubject"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Value as Quantity</span>
ans<span style="color: navy"><b> -> </b></span>obs.value = <span style="color: navy">(</span>ans.valueQuantity<span style="color: navy">)</span> <i>"setvalue"</i><span style="color: navy">;</span>
<span style="color: navy">// </span><span style="color: green">Extract nested items - LOINC code, effective date, status, reference ranges</span>
parentItem.item<b> as </b><span style="color: maroon">loincItem</span><b> where </b>(linkId.contains('code loinc'))<b> then</b><span style="color: navy"> {
</span> loincItem.answer<b> as </b><span style="color: maroon">loincAns</span><span style="color: navy"><b> -> </b></span>obs.code = <b>create</b><span style="color: navy">(</span><span style="color: blue">'CodeableConcept'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">code</span><b> then</b><span style="color: navy"> {
</span> loincAns<span style="color: navy"><b> -> </b></span>code.coding = <span style="color: navy">(</span>loincAns.valueCoding<span style="color: navy">)</span> <i>"setloinccoding"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"setcode"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extractloinc"</i><span style="color: navy">;</span>
parentItem.item<b> as </b><span style="color: maroon">dateItem</span><b> where </b>(linkId.contains('Date et heure du prélèvement'))<b> then</b><span style="color: navy"> {
</span> dateItem.answer<b> as </b><span style="color: maroon">dateAns</span><span style="color: navy"><b> -> </b></span>obs.effective = <span style="color: navy">(</span>dateAns.valueDateTime<span style="color: navy">)</span> <i>"seteffective"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"extracteffective"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"createobs"</i><span style="color: navy">;</span>
<span style="color: navy">}</span> <i>"obsentry"</i><span style="color: navy">;</span>
<span style="color: navy">}
</span></pre></div>
</text>
<url value="https://interop.aphp.fr/ig/fhir/dm/StructureMap/Q2FSL"/>
<version value="0.1.0"/>
<name value="Q2FSL"/>
<title
value="Transforms QuestionnaireResponse based on Questionnaire Usage Variables socles into FHIR resources conforming to DM profiles"/>
<status value="draft"/>
<date value="2025-10-23T20:49:03+00:00"/>
<publisher value="AP-HP"/>
<contact>
<name value="AP-HP"/>
<telecom>
<system value="url"/>
<value value="https://aphp.fr"/>
</telecom>
</contact>
<description
value="Transforms QuestionnaireResponse based on Questionnaire Usage Variables socles into FHIR resources conforming to DM profiles"/>
<jurisdiction>
<coding>
<system value="urn:iso:std:iso:3166"/>
<code value="FR"/>
<display value="France"/>
</coding>
</jurisdiction>
<structure>
<url
value="http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse"/>
<mode value="source"/>
<alias value="QuestionnaireResponse"/>
</structure>
<structure>
<url value="http://hl7.org/fhir/StructureDefinition/Bundle"/>
<mode value="target"/>
<alias value="Bundle"/>
</structure>
<group>
<name value="QuestionnaireResponseToBundle"/>
<typeMode value="none"/>
<documentation
value="Main entry point: Transform QuestionnaireResponse to Bundle"/>
<input>
<name value="src"/>
<type value="QuestionnaireResponse"/>
<mode value="source"/>
</input>
<input>
<name value="bundle"/>
<type value="Bundle"/>
<mode value="target"/>
</input>
<rule>
<name value="bundleid"/>
<source>
<context value="src"/>
</source>
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<context value="bundle"/>
<contextType value="variable"/>
<element value="id"/>
<transform value="uuid"/>
</target>
</rule>
<rule>
<name value="bundletype"/>
<source>
<context value="src"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
<element value="type"/>
<transform value="copy"/>
<parameter>
<valueString value="collection"/>
</parameter>
</target>
</rule>
<rule>
<name value="setTimestamp"/>
<source>
<context value="src"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
<element value="timestamp"/>
<transform value="evaluate"/>
<parameter>
<valueString value="now()"/>
</parameter>
</target>
</rule>
<rule>
<name value="patiententry"/>
<source>
<context value="src"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
<element value="entry"/>
<variable value="patientEntry"/>
</target>
<rule>
<name value="createpatientresource"/>
<source>
<context value="src"/>
</source>
<target>
<context value="patientEntry"/>
<contextType value="variable"/>
<element value="resource"/>
<variable value="patient"/>
<transform value="create"/>
<parameter>
<valueString value="Patient"/>
</parameter>
</target>
<rule>
<name value="createpatient"/>
<source>
<context value="src"/>
</source>
<dependent>
<name value="CreatePatient"/>
<variable value="src"/>
<variable value="patient"/>
</dependent>
</rule>
<rule>
<name value="setfullUrl"/>
<source>
<context value="src"/>
</source>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="id"/>
<variable value="patientId"/>
</target>
<target>
<context value="patientEntry"/>
<contextType value="variable"/>
<element value="fullUrl"/>
<transform value="append"/>
<parameter>
<valueString value="urn:uuid:"/>
</parameter>
<parameter>
<valueId value="patientId"/>
</parameter>
</target>
</rule>
<rule>
<name value="createencounters"/>
<source>
<context value="src"/>
</source>
<dependent>
<name value="CreateEncounters"/>
<variable value="src"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
<rule>
<name value="createlabobservations"/>
<source>
<context value="src"/>
</source>
<dependent>
<name value="CreateLaboratoryObservations"/>
<variable value="src"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
<rule>
<name value="createmedicationrequests"/>
<source>
<context value="src"/>
</source>
<dependent>
<name value="CreateMedicationRequests"/>
<variable value="src"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
<rule>
<name value="createmedicationadministrations"/>
<source>
<context value="src"/>
</source>
<dependent>
<name value="CreateMedicationAdministrations"/>
<variable value="src"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
<rule>
<name value="createvitalsigns"/>
<source>
<context value="src"/>
</source>
<dependent>
<name value="CreateVitalSignObservations"/>
<variable value="src"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
</rule>
</group>
<group>
<name value="CreatePatient"/>
<typeMode value="none"/>
<documentation value="Group: Create Patient from QuestionnaireResponse"/>
<input>
<name value="src"/>
<type value="QuestionnaireResponse"/>
<mode value="source"/>
</input>
<input>
<name value="patient"/>
<type value="Patient"/>
<mode value="target"/>
</input>
<rule>
<name value="patientid"/>
<source>
<context value="src"/>
</source>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="id"/>
<transform value="uuid"/>
</target>
</rule>
<rule>
<name value="patientmeta"/>
<source>
<context value="src"/>
</source>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="meta"/>
<variable value="meta"/>
<transform value="create"/>
<parameter>
<valueString value="Meta"/>
</parameter>
</target>
<rule>
<name value="patientprofile"/>
<source>
<context value="src"/>
</source>
<target>
<context value="meta"/>
<contextType value="variable"/>
<element value="profile"/>
<transform value="copy"/>
<parameter>
<valueString
value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMPatient"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="processsociodemographics"/>
<source>
<context value="src"/>
<element value="item"/>
<variable value="socioDemo"/>
<condition value="(linkId = '4647259356106')"/>
</source>
<rule>
<name value="processidentity"/>
<source>
<context value="socioDemo"/>
<element value="item"/>
<variable value="identity"/>
<condition value="(linkId = '2958000860428')"/>
</source>
<rule>
<name value="setname"/>
<source>
<context value="identity"/>
</source>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="name"/>
<variable value="name"/>
<transform value="create"/>
<parameter>
<valueString value="HumanName"/>
</parameter>
</target>
<rule>
<name value="extractfamily"/>
<source>
<context value="identity"/>
<element value="item"/>
<variable value="familyItem"/>
<condition value="(linkId = '8605698058770')"/>
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<rule>
<name value="setfamily"/>
<source>
<context value="familyItem"/>
<element value="answer"/>
<variable value="ans"/>
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<target>
<context value="name"/>
<contextType value="variable"/>
<element value="family"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueString"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="extractgiven"/>
<source>
<context value="identity"/>
<element value="item"/>
<variable value="givenItem"/>
<condition value="(linkId = '6214879623503')"/>
</source>
<rule>
<name value="setgiven"/>
<source>
<context value="givenItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="name"/>
<contextType value="variable"/>
<element value="given"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueString"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="extractnir"/>
<source>
<context value="identity"/>
<element value="item"/>
<variable value="nirItem"/>
<condition value="(linkId = '5711960356160')"/>
</source>
<rule>
<name value="setnir"/>
<source>
<context value="nirItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="identifier"/>
<variable value="nir"/>
<transform value="create"/>
<parameter>
<valueString value="Identifier"/>
</parameter>
</target>
<rule>
<name value="nirsystem"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="nir"/>
<contextType value="variable"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="urn:oid:1.2.250.1.213.1.4.8"/>
</parameter>
</target>
</rule>
<rule>
<name value="nirvalue"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="nir"/>
<contextType value="variable"/>
<element value="value"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueString"/>
</parameter>
</target>
</rule>
<rule>
<name value="nirtype"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="nir"/>
<contextType value="variable"/>
<element value="type"/>
<transform value="cc"/>
<parameter>
<valueString
value="http://interopsante.org/fhir/CodeSystem/fr-v2-0203"/>
</parameter>
<parameter>
<valueString value="NIR"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="extractins"/>
<source>
<context value="identity"/>
<element value="item"/>
<variable value="insItem"/>
<condition value="(linkId = '3764723550987')"/>
</source>
<rule>
<name value="setins"/>
<source>
<context value="insItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="identifier"/>
<variable value="ins"/>
<transform value="create"/>
<parameter>
<valueString value="Identifier"/>
</parameter>
</target>
<rule>
<name value="inssystem"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="ins"/>
<contextType value="variable"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString value="urn:oid:1.2.250.1.213.1.4.10"/>
</parameter>
</target>
</rule>
<rule>
<name value="insvalue"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="ins"/>
<contextType value="variable"/>
<element value="value"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueString"/>
</parameter>
</target>
</rule>
<rule>
<name value="instype"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="ins"/>
<contextType value="variable"/>
<element value="type"/>
<transform value="cc"/>
<parameter>
<valueString
value="http://interopsante.org/fhir/CodeSystem/fr-v2-0203"/>
</parameter>
<parameter>
<valueString value="INS-C"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="extractbirthdate"/>
<source>
<context value="identity"/>
<element value="item"/>
<variable value="birthItem"/>
<condition value="(linkId = '5036133558154')"/>
</source>
<rule>
<name value="setbirthdate"/>
<source>
<context value="birthItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="birthDate"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueDate"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="extractdeath"/>
<source>
<context value="identity"/>
<element value="item"/>
<variable value="deathItem"/>
<condition value="(linkId = '5633552097315')"/>
</source>
<rule>
<name value="setdeceaseddate"/>
<source>
<context value="deathItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="deceased"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueDate"/>
</parameter>
</target>
</rule>
<rule>
<name value="extractdeathsource"/>
<source>
<context value="deathItem"/>
<element value="item"/>
<variable value="deathSource"/>
<condition value="(linkId = '9098810065693')"/>
</source>
<rule>
<name value="setdeathsourceext"/>
<source>
<context value="deathSource"/>
<element value="answer"/>
<variable value="sourceAns"/>
</source>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="extension"/>
<variable value="ext"/>
<transform value="create"/>
<parameter>
<valueString value="Extension"/>
</parameter>
</target>
<rule>
<name value="deathsourceurl"/>
<source>
<context value="sourceAns"/>
</source>
<target>
<context value="ext"/>
<contextType value="variable"/>
<element value="url"/>
<transform value="copy"/>
<parameter>
<valueString
value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/death-source"/>
</parameter>
</target>
</rule>
<rule>
<name value="deathsourcevalue"/>
<source>
<context value="sourceAns"/>
</source>
<target>
<context value="ext"/>
<contextType value="variable"/>
<element value="value"/>
<transform value="evaluate"/>
<parameter>
<valueString value="sourceAns.valueCoding"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</rule>
<rule>
<name value="extractmultiplebirth"/>
<source>
<context value="identity"/>
<element value="item"/>
<variable value="multipleItem"/>
<condition value="(linkId = '6931296968515')"/>
</source>
<rule>
<name value="navigatevalue"/>
<source>
<context value="multipleItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<rule>
<name value="setmultiplebirth"/>
<source>
<context value="ans"/>
<element value="valueInteger"/>
<variable value="valueInteger"/>
</source>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="multipleBirth"/>
<transform value="copy"/>
<parameter>
<valueId value="valueInteger"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</rule>
<rule>
<name value="extractpmsidemographics"/>
<source>
<context value="src"/>
<element value="item"/>
<variable value="pmsiGroup"/>
<condition value="(linkId = '2825244231605')"/>
</source>
<rule>
<name value="extractgender"/>
<source>
<context value="pmsiGroup"/>
<element value="item"/>
<variable value="sexItem"/>
<condition value="(linkId = '3894630481120')"/>
</source>
<rule>
<name value="valueCoding"/>
<source>
<context value="sexItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<rule>
<name value="setgender"/>
<source>
<context value="ans"/>
<element value="valueCoding"/>
<variable value="valueCoding"/>
</source>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="gender"/>
<transform value="translate"/>
<parameter>
<valueId value="valueCoding"/>
</parameter>
<parameter>
<valueString
value="https://interop.aphp.fr/ig/fhir/dm/ConceptMap/dpi-gender-2-hl7-gender"/>
</parameter>
<parameter>
<valueString value="code"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="extractcodegeo"/>
<source>
<context value="pmsiGroup"/>
<element value="item"/>
<variable value="codeGeoItem"/>
<condition value="(linkId = '2446369196222')"/>
</source>
<rule>
<name value="setaddress"/>
<source>
<context value="codeGeoItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="address"/>
<variable value="addr"/>
<transform value="create"/>
<parameter>
<valueString value="Address"/>
</parameter>
</target>
<rule>
<name value="setcodegeoext"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="addr"/>
<contextType value="variable"/>
<element value="extension"/>
<variable value="ext"/>
<transform value="create"/>
<parameter>
<valueString value="Extension"/>
</parameter>
</target>
<rule>
<name value="codegeourl"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="ext"/>
<contextType value="variable"/>
<element value="url"/>
<transform value="copy"/>
<parameter>
<valueString
value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/pmsi-code-geo"/>
</parameter>
</target>
</rule>
<rule>
<name value="codegeovalue"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="ext"/>
<contextType value="variable"/>
<element value="value"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueCoding"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</rule>
</rule>
</rule>
</group>
<group>
<name value="CreateLocations"/>
<typeMode value="none"/>
<documentation
value="Group: Create Locations from geocoding and IRIS data"/>
<input>
<name value="src"/>
<type value="QuestionnaireResponse"/>
<mode value="source"/>
</input>
<input>
<name value="patient"/>
<type value="Patient"/>
<mode value="target"/>
</input>
<input>
<name value="bundle"/>
<type value="Bundle"/>
<mode value="target"/>
</input>
<rule>
<name value="processsociodemographicslocation"/>
<source>
<context value="src"/>
<element value="item"/>
<variable value="socioDemo"/>
<condition value="(linkId = '4647259356106')"/>
</source>
<rule>
<name value="processenvironment"/>
<source>
<context value="socioDemo"/>
<element value="item"/>
<variable value="environment"/>
<condition value="(linkId = '5491974639955')"/>
</source>
<rule>
<name value="geocodinglocationentry"/>
<source>
<context value="environment"/>
<element value="item"/>
<variable value="geocodingItem"/>
<condition value="(linkId = '3816475533472')"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
<element value="entry"/>
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<rule>
<name value="createlocation"/>
<source>
<context value="geocodingItem"/>
</source>
<target>
<context value="locationEntry"/>
<contextType value="variable"/>
<element value="resource"/>
<variable value="location"/>
<transform value="create"/>
<parameter>
<valueString value="Location"/>
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<rule>
<name value="locationid"/>
<source>
<context value="geocodingItem"/>
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<target>
<context value="location"/>
<contextType value="variable"/>
<element value="id"/>
<transform value="uuid"/>
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<rule>
<name value="locationmeta"/>
<source>
<context value="geocodingItem"/>
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<target>
<context value="location"/>
<contextType value="variable"/>
<element value="meta"/>
<variable value="meta"/>
<transform value="create"/>
<parameter>
<valueString value="Meta"/>
</parameter>
</target>
<rule>
<name value="locationprofile"/>
<source>
<context value="geocodingItem"/>
</source>
<target>
<context value="meta"/>
<contextType value="variable"/>
<element value="profile"/>
<transform value="copy"/>
<parameter>
<valueString
value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMLocation"/>
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</rule>
</rule>
<rule>
<name value="setposition"/>
<source>
<context value="geocodingItem"/>
</source>
<target>
<context value="location"/>
<contextType value="variable"/>
<element value="position"/>
<variable value="pos"/>
<transform value="create"/>
<parameter>
<valueString value="LocationPosition"/>
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</target>
<rule>
<name value="extractlatitude"/>
<source>
<context value="geocodingItem"/>
<element value="item"/>
<variable value="latItem"/>
<condition value="(linkId = '3709843054556')"/>
</source>
<rule>
<name value="setlatitude"/>
<source>
<context value="latItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="pos"/>
<contextType value="variable"/>
<element value="latitude"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueDecimal"/>
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</target>
</rule>
</rule>
<rule>
<name value="extractlongitude"/>
<source>
<context value="geocodingItem"/>
<element value="item"/>
<variable value="longItem"/>
<condition value="(linkId = '7651448032665')"/>
</source>
<rule>
<name value="setlongitude"/>
<source>
<context value="longItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="pos"/>
<contextType value="variable"/>
<element value="longitude"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueDecimal"/>
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</rule>
</rule>
</rule>
<rule>
<name value="setrequest"/>
<source>
<context value="location"/>
</source>
<target>
<context value="locationEntry"/>
<contextType value="variable"/>
<element value="request"/>
<variable value="request"/>
</target>
<rule>
<name value="setmethod"/>
<source>
<context value="location"/>
</source>
<target>
<context value="request"/>
<contextType value="variable"/>
<element value="method"/>
<transform value="copy"/>
<parameter>
<valueString value="POST"/>
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</target>
</rule>
<rule>
<name value="seturl"/>
<source>
<context value="location"/>
</source>
<target>
<context value="request"/>
<contextType value="variable"/>
<element value="url"/>
<transform value="copy"/>
<parameter>
<valueString value="Location"/>
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</target>
</rule>
</rule>
<rule>
<name value="setfullUrl"/>
<source>
<context value="location"/>
<element value="id"/>
<variable value="locId"/>
</source>
<target>
<context value="locationEntry"/>
<contextType value="variable"/>
<element value="fullUrl"/>
<transform value="append"/>
<parameter>
<valueString value="urn:uuid:"/>
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<parameter>
<valueId value="locId"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="processiris"/>
<source>
<context value="environment"/>
<element value="item"/>
<variable value="irisItem"/>
<condition value="(linkId = '7621032273792')"/>
</source>
<rule>
<name value="irislocationentry"/>
<source>
<context value="irisItem"/>
<element value="answer"/>
<variable value="irisAnswer"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
<element value="entry"/>
<variable value="locationEntry"/>
</target>
<rule>
<name value="createirislocation"/>
<source>
<context value="irisAnswer"/>
</source>
<target>
<context value="locationEntry"/>
<contextType value="variable"/>
<element value="resource"/>
<variable value="location"/>
<transform value="create"/>
<parameter>
<valueString value="Location"/>
</parameter>
</target>
<rule>
<name value="locationid"/>
<source>
<context value="irisAnswer"/>
</source>
<target>
<context value="location"/>
<contextType value="variable"/>
<element value="id"/>
<transform value="uuid"/>
</target>
</rule>
<rule>
<name value="locationmeta"/>
<source>
<context value="irisAnswer"/>
</source>
<target>
<context value="location"/>
<contextType value="variable"/>
<element value="meta"/>
<variable value="meta"/>
<transform value="create"/>
<parameter>
<valueString value="Meta"/>
</parameter>
</target>
<rule>
<name value="locationprofile"/>
<source>
<context value="irisAnswer"/>
</source>
<target>
<context value="meta"/>
<contextType value="variable"/>
<element value="profile"/>
<transform value="copy"/>
<parameter>
<valueString
value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMLocation"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="setirisidentifier"/>
<source>
<context value="irisAnswer"/>
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</target>
<rule>
<name value="medid"/>
<source>
<context value="prescribedGroup"/>
</source>
<target>
<context value="medication"/>
<contextType value="variable"/>
<element value="id"/>
<transform value="uuid"/>
</target>
</rule>
<rule>
<name value="extractatc"/>
<source>
<context value="prescribedGroup"/>
<element value="item"/>
<variable value="atcItem"/>
<condition value="(linkId.contains('ATC'))"/>
</source>
<rule>
<name value="setmedcode"/>
<source>
<context value="atcItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="medication"/>
<contextType value="variable"/>
<element value="code"/>
<variable value="code"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<rule>
<name value="setatccoding"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="code"/>
<contextType value="variable"/>
<element value="coding"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueCoding"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="setfullUrl"/>
<source>
<context value="prescribedGroup"/>
</source>
<target>
<context value="medication"/>
<contextType value="variable"/>
<element value="id"/>
<variable value="medId"/>
</target>
<target>
<context value="medEntry"/>
<contextType value="variable"/>
<element value="fullUrl"/>
<transform value="append"/>
<parameter>
<valueString value="urn:uuid:"/>
</parameter>
<parameter>
<valueId value="medId"/>
</parameter>
</target>
</rule>
<rule>
<name value="setmedicationreference"/>
<source>
<context value="prescribedGroup"/>
</source>
<target>
<context value="medication"/>
<contextType value="variable"/>
<element value="id"/>
<variable value="medId"/>
</target>
<target>
<context value="medReq"/>
<contextType value="variable"/>
<element value="medication"/>
<variable value="ref"/>
<transform value="create"/>
<parameter>
<valueString value="Reference"/>
</parameter>
</target>
<target>
<context value="ref"/>
<contextType value="variable"/>
<element value="reference"/>
<transform value="append"/>
<parameter>
<valueString value="Medication/"/>
</parameter>
<parameter>
<valueId value="medId"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="setdosage"/>
<source>
<context value="prescribedGroup"/>
</source>
<target>
<context value="medReq"/>
<contextType value="variable"/>
<element value="dosageInstruction"/>
<variable value="dosage"/>
<transform value="create"/>
<parameter>
<valueString value="Dosage"/>
</parameter>
</target>
<rule>
<name value="extractroute"/>
<source>
<context value="prescribedGroup"/>
<element value="item"/>
<variable value="routeItem"/>
<condition value="(linkId.contains('voie'))"/>
</source>
<rule>
<name value="setroute"/>
<source>
<context value="routeItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="dosage"/>
<contextType value="variable"/>
<element value="route"/>
<variable value="route"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<rule>
<name value="setroutecoding"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="route"/>
<contextType value="variable"/>
<element value="coding"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueCoding"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="extracttiming"/>
<source>
<context value="prescribedGroup"/>
<element value="item"/>
<variable value="timingItem"/>
<condition
value="(linkId.contains('timing') or linkId.contains('fréquence'))"/>
</source>
<rule>
<name value="settimingstructure"/>
<source>
<context value="timingItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="dosage"/>
<contextType value="variable"/>
<element value="timing"/>
<variable value="timing"/>
<transform value="create"/>
<parameter>
<valueString value="Timing"/>
</parameter>
</target>
<rule>
<name value="settiming"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="timing"/>
<contextType value="variable"/>
<element value="repeat"/>
<variable value="repeat"/>
<transform value="create"/>
<parameter>
<valueString value="TimingRepeat"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</rule>
</rule>
</rule>
</rule>
</group>
<group>
<name value="CreateMedicationAdministrations"/>
<typeMode value="none"/>
<documentation value="Group: Create Medication Administrations"/>
<input>
<name value="src"/>
<type value="QuestionnaireResponse"/>
<mode value="source"/>
</input>
<input>
<name value="patient"/>
<type value="Patient"/>
<mode value="target"/>
</input>
<input>
<name value="bundle"/>
<type value="Bundle"/>
<mode value="target"/>
</input>
<rule>
<name value="processmedexpoadmin"/>
<source>
<context value="src"/>
<element value="item"/>
<variable value="medExpoGroup"/>
<condition value="(linkId = '817801935685')"/>
</source>
<rule>
<name value="medadminentry"/>
<source>
<context value="medExpoGroup"/>
<element value="item"/>
<variable value="adminGroup"/>
<condition value="(linkId = '266852453304')"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
<element value="entry"/>
<variable value="medAdminEntry"/>
</target>
<rule>
<name value="createmedadmin"/>
<source>
<context value="adminGroup"/>
</source>
<target>
<context value="medAdminEntry"/>
<contextType value="variable"/>
<element value="resource"/>
<variable value="medAdmin"/>
<transform value="create"/>
<parameter>
<valueString value="MedicationAdministration"/>
</parameter>
</target>
<rule>
<name value="medadminid"/>
<source>
<context value="adminGroup"/>
</source>
<target>
<context value="medAdmin"/>
<contextType value="variable"/>
<element value="id"/>
<transform value="uuid"/>
</target>
</rule>
<rule>
<name value="medadminmeta"/>
<source>
<context value="adminGroup"/>
</source>
<target>
<context value="medAdmin"/>
<contextType value="variable"/>
<element value="meta"/>
<variable value="meta"/>
<transform value="create"/>
<parameter>
<valueString value="Meta"/>
</parameter>
</target>
<rule>
<name value="medadminprofile"/>
<source>
<context value="adminGroup"/>
</source>
<target>
<context value="meta"/>
<contextType value="variable"/>
<element value="profile"/>
<transform value="copy"/>
<parameter>
<valueString
value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMMedicationAdministration"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="setsubject"/>
<source>
<context value="adminGroup"/>
</source>
<target>
<context value="medAdmin"/>
<contextType value="variable"/>
<element value="subject"/>
<variable value="ref"/>
<transform value="create"/>
<parameter>
<valueString value="Reference"/>
</parameter>
</target>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="id"/>
<variable value="patId"/>
</target>
<target>
<context value="ref"/>
<contextType value="variable"/>
<element value="reference"/>
<transform value="append"/>
<parameter>
<valueString value="Patient/"/>
</parameter>
<parameter>
<valueId value="patId"/>
</parameter>
</target>
</rule>
<rule>
<name value="setstatus"/>
<source>
<context value="adminGroup"/>
</source>
<target>
<context value="medAdmin"/>
<contextType value="variable"/>
<element value="status"/>
<transform value="copy"/>
<parameter>
<valueString value="completed"/>
</parameter>
</target>
</rule>
<rule>
<name value="medicationentry"/>
<source>
<context value="adminGroup"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
<element value="entry"/>
<variable value="medEntry"/>
</target>
<rule>
<name value="createmedication"/>
<source>
<context value="adminGroup"/>
</source>
<target>
<context value="medEntry"/>
<contextType value="variable"/>
<element value="resource"/>
<variable value="medication"/>
<transform value="create"/>
<parameter>
<valueString value="Medication"/>
</parameter>
</target>
<rule>
<name value="medid"/>
<source>
<context value="adminGroup"/>
</source>
<target>
<context value="medication"/>
<contextType value="variable"/>
<element value="id"/>
<transform value="uuid"/>
</target>
</rule>
<rule>
<name value="extractatc"/>
<source>
<context value="adminGroup"/>
<element value="item"/>
<variable value="atcItem"/>
<condition value="(linkId.contains('ATC'))"/>
</source>
<rule>
<name value="setmedcode"/>
<source>
<context value="atcItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="medication"/>
<contextType value="variable"/>
<element value="code"/>
<variable value="code"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<rule>
<name value="setatccoding"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="code"/>
<contextType value="variable"/>
<element value="coding"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueCoding"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="setfullUrl"/>
<source>
<context value="adminGroup"/>
</source>
<target>
<context value="medication"/>
<contextType value="variable"/>
<element value="id"/>
<variable value="medId"/>
</target>
<target>
<context value="medEntry"/>
<contextType value="variable"/>
<element value="fullUrl"/>
<transform value="append"/>
<parameter>
<valueString value="Medication/"/>
</parameter>
<parameter>
<valueId value="medId"/>
</parameter>
</target>
</rule>
<rule>
<name value="setmedicationreference"/>
<source>
<context value="adminGroup"/>
</source>
<target>
<context value="medication"/>
<contextType value="variable"/>
<element value="id"/>
<variable value="medId"/>
</target>
<target>
<context value="medAdmin"/>
<contextType value="variable"/>
<element value="medication"/>
<variable value="ref"/>
<transform value="create"/>
<parameter>
<valueString value="Reference"/>
</parameter>
</target>
<target>
<context value="ref"/>
<contextType value="variable"/>
<element value="reference"/>
<transform value="append"/>
<parameter>
<valueString value="urn:uuid:"/>
</parameter>
<parameter>
<valueId value="medId"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="seteffective"/>
<source>
<context value="adminGroup"/>
</source>
<target>
<context value="medAdmin"/>
<contextType value="variable"/>
<element value="effective"/>
<variable value="period"/>
<transform value="create"/>
<parameter>
<valueString value="Period"/>
</parameter>
</target>
<rule>
<name value="extractstart"/>
<source>
<context value="adminGroup"/>
<element value="item"/>
<variable value="startItem"/>
<condition value="(linkId.contains('début'))"/>
</source>
<rule>
<name value="setstart"/>
<source>
<context value="startItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="period"/>
<contextType value="variable"/>
<element value="start"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueDateTime"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="extractend"/>
<source>
<context value="adminGroup"/>
<element value="item"/>
<variable value="endItem"/>
<condition value="(linkId.contains('fin'))"/>
</source>
<rule>
<name value="setend"/>
<source>
<context value="endItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="period"/>
<contextType value="variable"/>
<element value="end"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueDateTime"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="setdosage"/>
<source>
<context value="adminGroup"/>
</source>
<target>
<context value="medAdmin"/>
<contextType value="variable"/>
<element value="dosage"/>
<variable value="dosage"/>
<transform value="create"/>
<parameter>
<valueString value="Dosage"/>
</parameter>
</target>
<rule>
<name value="extractroute"/>
<source>
<context value="adminGroup"/>
<element value="item"/>
<variable value="routeItem"/>
<condition value="(linkId.contains('voie'))"/>
</source>
<rule>
<name value="setroute"/>
<source>
<context value="routeItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="dosage"/>
<contextType value="variable"/>
<element value="route"/>
<variable value="route"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<rule>
<name value="setroutecoding"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="route"/>
<contextType value="variable"/>
<element value="coding"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueCoding"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="extractdose"/>
<source>
<context value="adminGroup"/>
<element value="item"/>
<variable value="doseItem"/>
<condition value="(linkId.contains('dose'))"/>
</source>
<rule>
<name value="setdose"/>
<source>
<context value="doseItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="dosage"/>
<contextType value="variable"/>
<element value="dose"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueQuantity"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</rule>
</rule>
</rule>
</group>
<group>
<name value="CreateVitalSignObservations"/>
<typeMode value="none"/>
<documentation value="Group: Create Vital Sign Observations"/>
<input>
<name value="src"/>
<type value="QuestionnaireResponse"/>
<mode value="source"/>
</input>
<input>
<name value="patient"/>
<type value="Patient"/>
<mode value="target"/>
</input>
<input>
<name value="bundle"/>
<type value="Bundle"/>
<mode value="target"/>
</input>
<rule>
<name value="processexam"/>
<source>
<context value="src"/>
<element value="item"/>
<variable value="examGroup"/>
<condition value="(linkId = '214880328197')"/>
</source>
<rule>
<name value="processdossier"/>
<source>
<context value="examGroup"/>
<element value="item"/>
<variable value="dossierGroup"/>
<condition value="(linkId = '305831246173')"/>
</source>
<rule>
<name value="extractheight"/>
<source>
<context value="dossierGroup"/>
<element value="item"/>
<variable value="heightItem"/>
<condition value="(linkId = '4846902346416')"/>
</source>
<rule>
<name value="heightobsentry"/>
<source>
<context value="heightItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
<element value="entry"/>
<variable value="obsEntry"/>
</target>
<rule>
<name value="createheightobs"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obsEntry"/>
<contextType value="variable"/>
<element value="resource"/>
<variable value="obs"/>
<transform value="create"/>
<parameter>
<valueString value="Observation"/>
</parameter>
</target>
<rule>
<name value="obsid"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="id"/>
<transform value="uuid"/>
</target>
</rule>
<rule>
<name value="setfullUrl"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="id"/>
<variable value="obsId"/>
</target>
<target>
<context value="obsEntry"/>
<contextType value="variable"/>
<element value="fullUrl"/>
<transform value="append"/>
<parameter>
<valueString value="urn:uuid:"/>
</parameter>
<parameter>
<valueId value="obsId"/>
</parameter>
</target>
</rule>
<rule>
<name value="obsmeta"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="meta"/>
<variable value="meta"/>
<transform value="create"/>
<parameter>
<valueString value="Meta"/>
</parameter>
</target>
<rule>
<name value="obsprofile"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="meta"/>
<contextType value="variable"/>
<element value="profile"/>
<transform value="copy"/>
<parameter>
<valueString
value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMObservationBodyHeight"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="obsstatus"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="status"/>
<transform value="copy"/>
<parameter>
<valueString value="final"/>
</parameter>
</target>
</rule>
<rule>
<name value="obscategory"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="category"/>
<transform value="cc"/>
<parameter>
<valueString
value="http://terminology.hl7.org/CodeSystem/observation-category"/>
</parameter>
<parameter>
<valueString value="vital-signs"/>
</parameter>
</target>
</rule>
<rule>
<name value="obscode"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="code"/>
<transform value="cc"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
<parameter>
<valueString value="8302-2"/>
</parameter>
<parameter>
<valueString value="Body height"/>
</parameter>
</target>
</rule>
<rule>
<name value="setsubject"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="subject"/>
<variable value="ref"/>
<transform value="create"/>
<parameter>
<valueString value="Reference"/>
</parameter>
</target>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="id"/>
<variable value="patId"/>
</target>
<target>
<context value="ref"/>
<contextType value="variable"/>
<element value="reference"/>
<transform value="append"/>
<parameter>
<valueString value="Patient/"/>
</parameter>
<parameter>
<valueId value="patId"/>
</parameter>
</target>
</rule>
<rule>
<name value="setvalue"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="value"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueQuantity"/>
</parameter>
</target>
</rule>
<rule>
<name value="extracteffective"/>
<source>
<context value="heightItem"/>
<element value="item"/>
<variable value="dateItem"/>
<condition value="(linkId.contains('Date'))"/>
</source>
<rule>
<name value="seteffective"/>
<source>
<context value="dateItem"/>
<element value="answer"/>
<variable value="dateAns"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="effective"/>
<transform value="evaluate"/>
<parameter>
<valueString value="dateAns.valueDate"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</rule>
</rule>
<rule>
<name value="extractweight"/>
<source>
<context value="dossierGroup"/>
<element value="item"/>
<variable value="weightItem"/>
<condition value="(linkId = '451513217936')"/>
</source>
<rule>
<name value="weightobsentry"/>
<source>
<context value="weightItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
<element value="entry"/>
<variable value="obsEntry"/>
</target>
<rule>
<name value="createweightobs"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obsEntry"/>
<contextType value="variable"/>
<element value="resource"/>
<variable value="obs"/>
<transform value="create"/>
<parameter>
<valueString value="Observation"/>
</parameter>
</target>
<rule>
<name value="obsid"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="id"/>
<transform value="uuid"/>
</target>
</rule>
<rule>
<name value="setfullUrl"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="id"/>
<variable value="obsId"/>
</target>
<target>
<context value="obsEntry"/>
<contextType value="variable"/>
<element value="fullUrl"/>
<transform value="append"/>
<parameter>
<valueString value="urn:uuid:"/>
</parameter>
<parameter>
<valueId value="obsId"/>
</parameter>
</target>
</rule>
<rule>
<name value="obsmeta"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="meta"/>
<variable value="meta"/>
<transform value="create"/>
<parameter>
<valueString value="Meta"/>
</parameter>
</target>
<rule>
<name value="obsprofile"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="meta"/>
<contextType value="variable"/>
<element value="profile"/>
<transform value="copy"/>
<parameter>
<valueString
value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMObservationBodyWeight"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="obsstatus"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="status"/>
<transform value="copy"/>
<parameter>
<valueString value="final"/>
</parameter>
</target>
</rule>
<rule>
<name value="obscategory"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="category"/>
<transform value="cc"/>
<parameter>
<valueString
value="http://terminology.hl7.org/CodeSystem/observation-category"/>
</parameter>
<parameter>
<valueString value="vital-signs"/>
</parameter>
</target>
</rule>
<rule>
<name value="obscode"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="code"/>
<transform value="cc"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
<parameter>
<valueString value="29463-7"/>
</parameter>
<parameter>
<valueString value="Body weight"/>
</parameter>
</target>
</rule>
<rule>
<name value="setsubject"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="subject"/>
<variable value="ref"/>
<transform value="create"/>
<parameter>
<valueString value="Reference"/>
</parameter>
</target>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="id"/>
<variable value="patId"/>
</target>
<target>
<context value="ref"/>
<contextType value="variable"/>
<element value="reference"/>
<transform value="append"/>
<parameter>
<valueString value="Patient/"/>
</parameter>
<parameter>
<valueId value="patId"/>
</parameter>
</target>
</rule>
<rule>
<name value="setvalue"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="value"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueQuantity"/>
</parameter>
</target>
</rule>
<rule>
<name value="extracteffective"/>
<source>
<context value="weightItem"/>
<element value="item"/>
<variable value="dateItem"/>
<condition value="(linkId.contains('Date'))"/>
</source>
<rule>
<name value="seteffective"/>
<source>
<context value="dateItem"/>
<element value="answer"/>
<variable value="dateAns"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="effective"/>
<transform value="evaluate"/>
<parameter>
<valueString value="dateAns.valueDate"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</rule>
</rule>
<rule>
<name value="extractbloodpressure"/>
<source>
<context value="dossierGroup"/>
<element value="item"/>
<variable value="sysItem"/>
<condition value="(linkId = '4160905247955')"/>
</source>
<rule>
<name value="processsystolic"/>
<source>
<context value="sysItem"/>
<element value="answer"/>
<variable value="sysAns"/>
</source>
<rule>
<name value="extractdiastolic"/>
<source>
<context value="dossierGroup"/>
<element value="item"/>
<variable value="diaItem"/>
<condition value="(linkId = '848797127998')"/>
</source>
<rule>
<name value="bpobsentr"/>
<source>
<context value="diaItem"/>
<element value="answer"/>
<variable value="diaAns"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
<element value="entry"/>
<variable value="obsEntry"/>
</target>
<rule>
<name value="createbpobs"/>
<source>
<context value="sysAns"/>
</source>
<target>
<context value="obsEntry"/>
<contextType value="variable"/>
<element value="resource"/>
<variable value="obs"/>
<transform value="create"/>
<parameter>
<valueString value="Observation"/>
</parameter>
</target>
<rule>
<name value="obsid"/>
<source>
<context value="sysAns"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="id"/>
<transform value="uuid"/>
</target>
</rule>
<rule>
<name value="setfullUrl"/>
<source>
<context value="sysAns"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="id"/>
<variable value="obsId"/>
</target>
<target>
<context value="obsEntry"/>
<contextType value="variable"/>
<element value="fullUrl"/>
<transform value="append"/>
<parameter>
<valueString value="urn:uuid:"/>
</parameter>
<parameter>
<valueId value="obsId"/>
</parameter>
</target>
</rule>
<rule>
<name value="obsmeta"/>
<source>
<context value="sysAns"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="meta"/>
<variable value="meta"/>
<transform value="create"/>
<parameter>
<valueString value="Meta"/>
</parameter>
</target>
<rule>
<name value="obsprofile"/>
<source>
<context value="sysAns"/>
</source>
<target>
<context value="meta"/>
<contextType value="variable"/>
<element value="profile"/>
<transform value="copy"/>
<parameter>
<valueString
value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMObservationBloodPressure"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="obsstatus"/>
<source>
<context value="sysAns"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="status"/>
<transform value="copy"/>
<parameter>
<valueString value="final"/>
</parameter>
</target>
</rule>
<rule>
<name value="obscategory"/>
<source>
<context value="sysAns"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="category"/>
<transform value="cc"/>
<parameter>
<valueString
value="http://terminology.hl7.org/CodeSystem/observation-category"/>
</parameter>
<parameter>
<valueString value="vital-signs"/>
</parameter>
</target>
</rule>
<rule>
<name value="obscode"/>
<source>
<context value="sysAns"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="code"/>
<transform value="cc"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
<parameter>
<valueString value="85354-9"/>
</parameter>
<parameter>
<valueString value="Blood pressure panel"/>
</parameter>
</target>
</rule>
<rule>
<name value="setsubject"/>
<source>
<context value="sysAns"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="subject"/>
<variable value="ref"/>
<transform value="create"/>
<parameter>
<valueString value="Reference"/>
</parameter>
</target>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="id"/>
<variable value="patId"/>
</target>
<target>
<context value="ref"/>
<contextType value="variable"/>
<element value="reference"/>
<transform value="append"/>
<parameter>
<valueString value="Patient/"/>
</parameter>
<parameter>
<valueId value="patId"/>
</parameter>
</target>
</rule>
<rule>
<name value="setsystolic"/>
<source>
<context value="sysAns"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="component"/>
<variable value="sysComp"/>
<transform value="create"/>
<parameter>
<valueString value="Observation"/>
</parameter>
</target>
<rule>
<name value="syscode"/>
<source>
<context value="sysAns"/>
</source>
<target>
<context value="sysComp"/>
<contextType value="variable"/>
<element value="code"/>
<transform value="cc"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
<parameter>
<valueString value="8480-6"/>
</parameter>
<parameter>
<valueString value="Systolic blood pressure"/>
</parameter>
</target>
</rule>
<rule>
<name value="sysvalue"/>
<source>
<context value="sysAns"/>
</source>
<target>
<context value="sysComp"/>
<contextType value="variable"/>
<element value="value"/>
<transform value="evaluate"/>
<parameter>
<valueString value="sysAns.valueQuantity"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="setdiastolic"/>
<source>
<context value="diaAns"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="component"/>
<variable value="diaComp"/>
<transform value="create"/>
<parameter>
<valueString value="Observation"/>
</parameter>
</target>
<rule>
<name value="diacode"/>
<source>
<context value="diaAns"/>
</source>
<target>
<context value="diaComp"/>
<contextType value="variable"/>
<element value="code"/>
<transform value="cc"/>
<parameter>
<valueString value="http://loinc.org"/>
</parameter>
<parameter>
<valueString value="8462-4"/>
</parameter>
<parameter>
<valueString value="Diastolic blood pressure"/>
</parameter>
</target>
</rule>
<rule>
<name value="diavalue"/>
<source>
<context value="diaAns"/>
</source>
<target>
<context value="diaComp"/>
<contextType value="variable"/>
<element value="value"/>
<transform value="evaluate"/>
<parameter>
<valueString value="diaAns.valueQuantity"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="extracteffective"/>
<source>
<context value="sysItem"/>
<element value="item"/>
<variable value="dateItem"/>
<condition value="(linkId.contains('Date'))"/>
</source>
<rule>
<name value="seteffective"/>
<source>
<context value="dateItem"/>
<element value="answer"/>
<variable value="dateAns"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="effective"/>
<transform value="evaluate"/>
<parameter>
<valueString value="dateAns.valueDate"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</rule>
</rule>
</rule>
</rule>
</rule>
</rule>
</group>
<group>
<name value="CreateLaboratoryObservations"/>
<typeMode value="none"/>
<documentation value="Group: Create Laboratory Observations"/>
<input>
<name value="src"/>
<type value="QuestionnaireResponse"/>
<mode value="source"/>
</input>
<input>
<name value="patient"/>
<type value="Patient"/>
<mode value="target"/>
</input>
<input>
<name value="bundle"/>
<type value="Bundle"/>
<mode value="target"/>
</input>
<rule>
<name value="processbiology"/>
<source>
<context value="src"/>
<element value="item"/>
<variable value="bioGroup"/>
<condition value="(linkId = '7702944131447')"/>
</source>
<rule>
<name value="processrenal"/>
<source>
<context value="bioGroup"/>
<element value="item"/>
<variable value="renalGroup"/>
<condition value="(linkId = '5241323453538')"/>
</source>
<rule>
<name value="extracturea"/>
<source>
<context value="renalGroup"/>
<element value="item"/>
<variable value="ureaItem"/>
<condition value="(linkId = '7169026818760')"/>
</source>
<rule>
<name value="createureaobs"/>
<source>
<context value="ureaItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="ureaItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extractcreat"/>
<source>
<context value="renalGroup"/>
<element value="item"/>
<variable value="creatItem"/>
<condition value="(linkId = '500408205043')"/>
</source>
<rule>
<name value="createcreatobs"/>
<source>
<context value="creatItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="creatItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extractdfg"/>
<source>
<context value="renalGroup"/>
<element value="item"/>
<variable value="dfgItem"/>
<condition value="(linkId = '786621340679')"/>
</source>
<rule>
<name value="createdfgobs"/>
<source>
<context value="dfgItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="dfgItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
</rule>
<rule>
<name value="processhemo"/>
<source>
<context value="bioGroup"/>
<element value="item"/>
<variable value="hemoGroup"/>
<condition value="(linkId = '419282985970')"/>
</source>
<rule>
<name value="extractleuko"/>
<source>
<context value="hemoGroup"/>
<element value="item"/>
<variable value="leukoItem"/>
<condition value="(linkId = '210077225604')"/>
</source>
<rule>
<name value="createleukoobs"/>
<source>
<context value="leukoItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="leukoItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extracthemo"/>
<source>
<context value="hemoGroup"/>
<element value="item"/>
<variable value="hemoItem"/>
<condition value="(linkId = '304159088493')"/>
</source>
<rule>
<name value="createhemoobs"/>
<source>
<context value="hemoItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="hemoItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extracthemat"/>
<source>
<context value="hemoGroup"/>
<element value="item"/>
<variable value="hematItem"/>
<condition value="(linkId = '5687959006070')"/>
</source>
<rule>
<name value="createhematobs"/>
<source>
<context value="hematItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="hematItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extractery"/>
<source>
<context value="hemoGroup"/>
<element value="item"/>
<variable value="eryItem"/>
<condition value="(linkId = '8697447896867')"/>
</source>
<rule>
<name value="createeryobs"/>
<source>
<context value="eryItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="eryItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extractvgm"/>
<source>
<context value="hemoGroup"/>
<element value="item"/>
<variable value="vgmItem"/>
<condition value="(linkId = '5584978899134')"/>
</source>
<rule>
<name value="createvgmobs"/>
<source>
<context value="vgmItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="vgmItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extractplat"/>
<source>
<context value="hemoGroup"/>
<element value="item"/>
<variable value="platItem"/>
<condition value="(linkId = '2881119993430')"/>
</source>
<rule>
<name value="createplatobs"/>
<source>
<context value="platItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="platItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extractneut"/>
<source>
<context value="hemoGroup"/>
<element value="item"/>
<variable value="neutItem"/>
<condition value="(linkId = '7408951746270')"/>
</source>
<rule>
<name value="createneutobs"/>
<source>
<context value="neutItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="neutItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extractlymph"/>
<source>
<context value="hemoGroup"/>
<element value="item"/>
<variable value="lymphItem"/>
<condition value="(linkId = '809808816195')"/>
</source>
<rule>
<name value="createlymphobs"/>
<source>
<context value="lymphItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="lymphItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extracteosi"/>
<source>
<context value="hemoGroup"/>
<element value="item"/>
<variable value="eosiItem"/>
<condition value="(linkId = '6451887990893')"/>
</source>
<rule>
<name value="createeosiobs"/>
<source>
<context value="eosiItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="eosiItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extractmono"/>
<source>
<context value="hemoGroup"/>
<element value="item"/>
<variable value="monoItem"/>
<condition value="(linkId = '7935935816936')"/>
</source>
<rule>
<name value="createmonoobs"/>
<source>
<context value="monoItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="monoItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extracttp"/>
<source>
<context value="hemoGroup"/>
<element value="item"/>
<variable value="tpItem"/>
<condition value="(linkId = '2055949655770')"/>
</source>
<rule>
<name value="createtpobs"/>
<source>
<context value="tpItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="tpItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extracttca"/>
<source>
<context value="hemoGroup"/>
<element value="item"/>
<variable value="tcaItem"/>
<condition value="(linkId = '2527095476817')"/>
</source>
<rule>
<name value="createtcaobs"/>
<source>
<context value="tcaItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="tcaItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
</rule>
<rule>
<name value="processliver"/>
<source>
<context value="bioGroup"/>
<element value="item"/>
<variable value="liverGroup"/>
<condition value="(linkId = '3893612773040')"/>
</source>
<rule>
<name value="extractasat"/>
<source>
<context value="liverGroup"/>
<element value="item"/>
<variable value="asatItem"/>
<condition value="(linkId = '3028330976100')"/>
</source>
<rule>
<name value="createasatobs"/>
<source>
<context value="asatItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="asatItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extractalat"/>
<source>
<context value="liverGroup"/>
<element value="item"/>
<variable value="alatItem"/>
<condition value="(linkId = '8486813893880')"/>
</source>
<rule>
<name value="createalatobs"/>
<source>
<context value="alatItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="alatItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extractggt"/>
<source>
<context value="liverGroup"/>
<element value="item"/>
<variable value="ggtItem"/>
<condition value="(linkId = '3663296044037')"/>
</source>
<rule>
<name value="createggtobs"/>
<source>
<context value="ggtItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="ggtItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extractpal"/>
<source>
<context value="liverGroup"/>
<element value="item"/>
<variable value="palItem"/>
<condition value="(linkId = '2690026606933')"/>
</source>
<rule>
<name value="createpalobs"/>
<source>
<context value="palItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="palItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extractbiltot"/>
<source>
<context value="liverGroup"/>
<element value="item"/>
<variable value="bilTotItem"/>
<condition value="(linkId = '9068831071023')"/>
</source>
<rule>
<name value="createbiltotobs"/>
<source>
<context value="bilTotItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="bilTotItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extractbilconj"/>
<source>
<context value="liverGroup"/>
<element value="item"/>
<variable value="bilConjItem"/>
<condition value="(linkId = '8893717988787')"/>
</source>
<rule>
<name value="createbilconjobs"/>
<source>
<context value="bilConjItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="bilConjItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
</rule>
<rule>
<name value="processglucose"/>
<source>
<context value="bioGroup"/>
<element value="item"/>
<variable value="glucoseGroup"/>
<condition value="(linkId = '8929068894076')"/>
</source>
<rule>
<name value="extractglyc"/>
<source>
<context value="glucoseGroup"/>
<element value="item"/>
<variable value="glycItem"/>
<condition value="(linkId = '8193929027997')"/>
</source>
<rule>
<name value="createglycobs"/>
<source>
<context value="glycItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="glycItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
<rule>
<name value="extracthba1c"/>
<source>
<context value="glucoseGroup"/>
<element value="item"/>
<variable value="hba1cItem"/>
<condition value="(linkId = '7063892830923')"/>
</source>
<rule>
<name value="createhba1cobs"/>
<source>
<context value="hba1cItem"/>
<element value="answer"/>
<variable value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
</target>
<dependent>
<name value="CreateLabObservation"/>
<variable value="ans"/>
<variable value="hba1cItem"/>
<variable value="patient"/>
<variable value="bundle"/>
</dependent>
</rule>
</rule>
</rule>
</rule>
</group>
<group>
<name value="CreateLabObservation"/>
<typeMode value="none"/>
<documentation value="Helper: Create a single Laboratory Observation"/>
<input>
<name value="ans"/>
<mode value="source"/>
</input>
<input>
<name value="parentItem"/>
<mode value="source"/>
</input>
<input>
<name value="patient"/>
<type value="Patient"/>
<mode value="target"/>
</input>
<input>
<name value="bundle"/>
<type value="Bundle"/>
<mode value="target"/>
</input>
<rule>
<name value="obsentry"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="bundle"/>
<contextType value="variable"/>
<element value="entry"/>
<variable value="obsEntry"/>
</target>
<rule>
<name value="createobs"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obsEntry"/>
<contextType value="variable"/>
<element value="resource"/>
<variable value="obs"/>
<transform value="create"/>
<parameter>
<valueString value="Observation"/>
</parameter>
</target>
<rule>
<name value="obsid"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="id"/>
<transform value="uuid"/>
</target>
</rule>
<rule>
<name value="setfullUrl"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="id"/>
<variable value="obsId"/>
</target>
<target>
<context value="obsEntry"/>
<contextType value="variable"/>
<element value="fullUrl"/>
<transform value="append"/>
<parameter>
<valueString value="urn:uuid:"/>
</parameter>
<parameter>
<valueId value="obsId"/>
</parameter>
</target>
</rule>
<rule>
<name value="obsmeta"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="meta"/>
<variable value="meta"/>
<transform value="create"/>
<parameter>
<valueString value="Meta"/>
</parameter>
</target>
<rule>
<name value="obsprofile"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="meta"/>
<contextType value="variable"/>
<element value="profile"/>
<transform value="copy"/>
<parameter>
<valueString
value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/dm-observation-laboratory-generic"/>
</parameter>
</target>
</rule>
</rule>
<rule>
<name value="obsstatus"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="status"/>
<transform value="copy"/>
<parameter>
<valueString value="final"/>
</parameter>
</target>
</rule>
<rule>
<name value="setcategory"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="category"/>
<variable value="cat"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<rule>
<name value="setcategorycoding"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="cat"/>
<contextType value="variable"/>
<element value="coding"/>
<variable value="coding"/>
<transform value="create"/>
<parameter>
<valueString value="Coding"/>
</parameter>
</target>
<rule>
<name value="catsystem"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="coding"/>
<contextType value="variable"/>
<element value="system"/>
<transform value="copy"/>
<parameter>
<valueString
value="http://terminology.hl7.org/CodeSystem/observation-category"/>
</parameter>
</target>
</rule>
<rule>
<name value="catcode"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="coding"/>
<contextType value="variable"/>
<element value="code"/>
<transform value="copy"/>
<parameter>
<valueString value="laboratory"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="setsubject"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="subject"/>
<variable value="ref"/>
<transform value="create"/>
<parameter>
<valueString value="Reference"/>
</parameter>
</target>
<target>
<context value="patient"/>
<contextType value="variable"/>
<element value="id"/>
<variable value="patId"/>
</target>
<target>
<context value="ref"/>
<contextType value="variable"/>
<element value="reference"/>
<transform value="append"/>
<parameter>
<valueString value="Patient/"/>
</parameter>
<parameter>
<valueId value="patId"/>
</parameter>
</target>
</rule>
<rule>
<name value="setvalue"/>
<source>
<context value="ans"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="value"/>
<transform value="evaluate"/>
<parameter>
<valueString value="ans.valueQuantity"/>
</parameter>
</target>
</rule>
<rule>
<name value="extractloinc"/>
<source>
<context value="parentItem"/>
<element value="item"/>
<variable value="loincItem"/>
<condition value="(linkId.contains('code loinc'))"/>
</source>
<rule>
<name value="setcode"/>
<source>
<context value="loincItem"/>
<element value="answer"/>
<variable value="loincAns"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="code"/>
<variable value="code"/>
<transform value="create"/>
<parameter>
<valueString value="CodeableConcept"/>
</parameter>
</target>
<rule>
<name value="setloinccoding"/>
<source>
<context value="loincAns"/>
</source>
<target>
<context value="code"/>
<contextType value="variable"/>
<element value="coding"/>
<transform value="evaluate"/>
<parameter>
<valueString value="loincAns.valueCoding"/>
</parameter>
</target>
</rule>
</rule>
</rule>
<rule>
<name value="extracteffective"/>
<source>
<context value="parentItem"/>
<element value="item"/>
<variable value="dateItem"/>
<condition
value="(linkId.contains('Date et heure du prélèvement'))"/>
</source>
<rule>
<name value="seteffective"/>
<source>
<context value="dateItem"/>
<element value="answer"/>
<variable value="dateAns"/>
</source>
<target>
<context value="obs"/>
<contextType value="variable"/>
<element value="effective"/>
<transform value="evaluate"/>
<parameter>
<valueString value="dateAns.valueDateTime"/>
</parameter>
</target>
</rule>
</rule>
</rule>
</rule>
</group>
</StructureMap>