Transforms QuestionnaireResponse based on Questionnaire Usage Variables socles into FHIR resources conforming to DM profiles - JSON Representation

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: Transforms QuestionnaireResponse based on Questionnaire Usage Variables socles into FHIR resources conforming to DM profiles - JSON Representation

Draft as of 2025-10-23
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{
  "resourceType" : "StructureMap",
  "id" : "Q2FSL",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Narratif généré : StructureMap Q2FSL</b></p><a name=\"Q2FSL\"> </a><a name=\"hcQ2FSL\"> </a><pre class=\"fml\">\r\n<b>map</b><span style=\"color: navy\"> &quot;</span>https://interop.aphp.fr/ig/fhir/dm/StructureMap/Q2FSL<span style=\"color: navy\">&quot; = &quot;</span>Q2FSL<span style=\"color: navy\">&quot;\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Transforms QuestionnaireResponse based on Questionnaire Usage Variables socles into FHIR resources conforming to DM profiles</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span><a href=\"http://hl7.org/fhir/R4/questionnaireresponse.html\" title=\"QuestionnaireResponse\">http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse</a><span style=\"color: navy\">&quot; </span><b>alias </b>QuestionnaireResponse <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span><a href=\"http://hl7.org/fhir/R4/bundle.html\" title=\"Bundle\">http://hl7.org/fhir/StructureDefinition/Bundle</a><span style=\"color: navy\">&quot; </span><b>alias </b>Bundle <b>as </b><b>target</b>\r\n\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">Main entry point: Transform QuestionnaireResponse to Bundle</span>\r\n<b>group </b>QuestionnaireResponseToBundle<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>QuestionnaireResponse, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  <span style=\"color: navy\">// </span><span style=\"color: green\">Initialize Bundle</span>\r\n  src<span style=\"color: navy\"><b> -&gt; </b></span>bundle.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;bundleid&quot;</i><span style=\"color: navy\">;</span>\r\n  src<span style=\"color: navy\"><b> -&gt; </b></span>bundle.type = <span style=\"color: blue\">'collection'</span> <i>&quot;bundletype&quot;</i><span style=\"color: navy\">;</span>\r\n  src<span style=\"color: navy\"><b> -&gt; </b></span>bundle.timestamp = <span style=\"color: navy\">(</span>now()<span style=\"color: navy\">)</span> <i>&quot;setTimestamp&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">// </span><span style=\"color: green\">Create Patient resource</span>\r\n  src<span style=\"color: navy\"><b> -&gt; </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">patientEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    src<span style=\"color: navy\"><b> -&gt; </b></span>patientEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">patient</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      src<b> then </b>CreatePatient<span style=\"color: navy\">(</span><span style=\"color: maroon\">src</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">)</span> <i>&quot;createpatient&quot;</i><span style=\"color: navy\">;</span>\r\n      src<span style=\"color: navy\"><b> -&gt; </b></span> patient.id<b> as </b><span style=\"color: maroon\">patientId</span><span style=\"color: navy\">, </span> patientEntry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patientId</span><span style=\"color: navy\">)</span> <i>&quot;setfullUrl&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Create Locations from geocoding data</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">src then CreateLocations(src, patient, bundle) &quot;create-locations&quot;;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Create Encounters from PMSI data</span>\r\n      src<b> then </b>CreateEncounters<span style=\"color: navy\">(</span><span style=\"color: maroon\">src</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createencounters&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Create Laboratory Observations</span>\r\n      src<b> then </b>CreateLaboratoryObservations<span style=\"color: navy\">(</span><span style=\"color: maroon\">src</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createlabobservations&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Create Medication Requests</span>\r\n      src<b> then </b>CreateMedicationRequests<span style=\"color: navy\">(</span><span style=\"color: maroon\">src</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createmedicationrequests&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Create Medication Administrations</span>\r\n      src<b> then </b>CreateMedicationAdministrations<span style=\"color: navy\">(</span><span style=\"color: maroon\">src</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createmedicationadministrations&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Create Vital Sign Observations</span>\r\n      src<b> then </b>CreateVitalSignObservations<span style=\"color: navy\">(</span><span style=\"color: maroon\">src</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createvitalsigns&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;createpatientresource&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;patiententry&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Group: Create Patient from QuestionnaireResponse</span>\r\n<b>group </b>CreatePatient<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>QuestionnaireResponse, <b>target</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\"> : </span>Patient<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  src<span style=\"color: navy\"><b> -&gt; </b></span>patient.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;patientid&quot;</i><span style=\"color: navy\">;</span>\r\n  src<span style=\"color: navy\"><b> -&gt; </b></span>patient.meta = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Meta'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">meta</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    src<span style=\"color: navy\"><b> -&gt; </b></span>meta.profile = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMPatient'</span> <i>&quot;patientprofile&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;patientmeta&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">// </span><span style=\"color: green\">Extract patient identity data from linkId 4647259356106 &gt; 2958000860428</span>\r\n  src.item<b> as </b><span style=\"color: maroon\">socioDemo</span><b> where </b>(linkId = '4647259356106')<b> then</b><span style=\"color: navy\"> {\r\n</span>    socioDemo.item<b> as </b><span style=\"color: maroon\">identity</span><b> where </b>(linkId = '2958000860428')<b> then</b><span style=\"color: navy\"> {\r\n</span>      <span style=\"color: navy\">// </span><span style=\"color: green\">Patient name (linkId 8605698058770 = family, 6214879623503 = given)</span>\r\n      identity<span style=\"color: navy\"><b> -&gt; </b></span>patient.name = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'HumanName'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">name</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        identity.item<b> as </b><span style=\"color: maroon\">familyItem</span><b> where </b>(linkId = '8605698058770')<b> then</b><span style=\"color: navy\"> {\r\n</span>          familyItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>name.family = <span style=\"color: navy\">(</span>ans.valueString<span style=\"color: navy\">)</span> <i>&quot;setfamily&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;extractfamily&quot;</i><span style=\"color: navy\">;</span>\r\n        identity.item<b> as </b><span style=\"color: maroon\">givenItem</span><b> where </b>(linkId = '6214879623503')<b> then</b><span style=\"color: navy\"> {\r\n</span>          givenItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>name.given = <span style=\"color: navy\">(</span>ans.valueString<span style=\"color: navy\">)</span> <i>&quot;setgiven&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;extractgiven&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;setname&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">NIR identifier (linkId 5711960356160)</span>\r\n      identity.item<b> as </b><span style=\"color: maroon\">nirItem</span><b> where </b>(linkId = '5711960356160')<b> then</b><span style=\"color: navy\"> {\r\n</span>        nirItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>patient.identifier = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Identifier'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">nir</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          ans<span style=\"color: navy\"><b> -&gt; </b></span>nir.system = <span style=\"color: blue\">'urn:oid:1.2.250.1.213.1.4.8'</span> <i>&quot;nirsystem&quot;</i><span style=\"color: navy\">;</span>\r\n          ans<span style=\"color: navy\"><b> -&gt; </b></span>nir.value = <span style=\"color: navy\">(</span>ans.valueString<span style=\"color: navy\">)</span> <i>&quot;nirvalue&quot;</i><span style=\"color: navy\">;</span>\r\n          ans<span style=\"color: navy\"><b> -&gt; </b></span>nir.type = <b>cc</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://interopsante.org/fhir/CodeSystem/fr-v2-0203'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'NIR'</span><span style=\"color: navy\">)</span> <i>&quot;nirtype&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;setnir&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractnir&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">INS identifier (linkId 3764723550987)</span>\r\n      identity.item<b> as </b><span style=\"color: maroon\">insItem</span><b> where </b>(linkId = '3764723550987')<b> then</b><span style=\"color: navy\"> {\r\n</span>        insItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>patient.identifier = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Identifier'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ins</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          ans<span style=\"color: navy\"><b> -&gt; </b></span>ins.system = <span style=\"color: blue\">'urn:oid:1.2.250.1.213.1.4.10'</span> <i>&quot;inssystem&quot;</i><span style=\"color: navy\">;</span>\r\n          ans<span style=\"color: navy\"><b> -&gt; </b></span>ins.value = <span style=\"color: navy\">(</span>ans.valueString<span style=\"color: navy\">)</span> <i>&quot;insvalue&quot;</i><span style=\"color: navy\">;</span>\r\n          ans<span style=\"color: navy\"><b> -&gt; </b></span>ins.type = <b>cc</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://interopsante.org/fhir/CodeSystem/fr-v2-0203'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'INS-C'</span><span style=\"color: navy\">)</span> <i>&quot;instype&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;setins&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractins&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Birth date (linkId 5036133558154)</span>\r\n      identity.item<b> as </b><span style=\"color: maroon\">birthItem</span><b> where </b>(linkId = '5036133558154')<b> then</b><span style=\"color: navy\"> {\r\n</span>        birthItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>patient.birthDate = <span style=\"color: navy\">(</span>ans.valueDate<span style=\"color: navy\">)</span> <i>&quot;setbirthdate&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractbirthdate&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Death date (linkId 5633552097315)</span>\r\n      identity.item<b> as </b><span style=\"color: maroon\">deathItem</span><b> where </b>(linkId = '5633552097315')<b> then</b><span style=\"color: navy\"> {\r\n</span>        deathItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>patient.deceased = <span style=\"color: navy\">(</span>ans.valueDate<span style=\"color: navy\">)</span> <i>&quot;setdeceaseddate&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">// </span><span style=\"color: green\">Death source (linkId 9098810065693)</span>\r\n        deathItem.item<b> as </b><span style=\"color: maroon\">deathSource</span><b> where </b>(linkId = '9098810065693')<b> then</b><span style=\"color: navy\"> {\r\n</span>          deathSource.answer<b> as </b><span style=\"color: maroon\">sourceAns</span><span style=\"color: navy\"><b> -&gt; </b></span>patient.extension = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Extension'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ext</span><b> then</b><span style=\"color: navy\"> {\r\n</span>            sourceAns<span style=\"color: navy\"><b> -&gt; </b></span>ext.url = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/death-source'</span> <i>&quot;deathsourceurl&quot;</i><span style=\"color: navy\">;</span>\r\n            sourceAns<span style=\"color: navy\"><b> -&gt; </b></span>ext.value = <span style=\"color: navy\">(</span>sourceAns.valueCoding<span style=\"color: navy\">)</span> <i>&quot;deathsourcevalue&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;setdeathsourceext&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;extractdeathsource&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractdeath&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Multiple birth rank (linkId 6931296968515)</span>\r\n      identity.item<b> as </b><span style=\"color: maroon\">multipleItem</span><b> where </b>(linkId = '6931296968515')<b> then</b><span style=\"color: navy\"> {\r\n</span>        multipleItem.answer<b> as </b><span style=\"color: maroon\">ans</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          ans.valueInteger<b> as </b><span style=\"color: maroon\">valueInteger</span><span style=\"color: navy\"><b> -&gt; </b></span>patient.multipleBirth = <span style=\"color: maroon\">valueInteger</span> <i>&quot;setmultiplebirth&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;navigatevalue&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractmultiplebirth&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;processidentity&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">// </span><span style=\"color: green\">Gender from PMSI data (linkId 3894630481120 within 2825244231605)</span>\r\n    src.item<b> as </b><span style=\"color: maroon\">pmsiGroup</span><b> where </b>(linkId = '2825244231605')<b> then</b><span style=\"color: navy\"> {\r\n</span>      pmsiGroup.item<b> as </b><span style=\"color: maroon\">sexItem</span><b> where </b>(linkId = '3894630481120')<b> then</b><span style=\"color: navy\"> {\r\n</span>        sexItem.answer<b> as </b><span style=\"color: maroon\">ans</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          ans.valueCoding<b> as </b><span style=\"color: maroon\">valueCoding</span><span style=\"color: navy\"><b> -&gt; </b></span>patient.gender = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">valueCoding</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/ConceptMap/dpi-gender-2-hl7-gender'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span> <i>&quot;setgender&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;valueCoding&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractgender&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Address from code géographique (linkId 2446369196222)</span>\r\n      pmsiGroup.item<b> as </b><span style=\"color: maroon\">codeGeoItem</span><b> where </b>(linkId = '2446369196222')<b> then</b><span style=\"color: navy\"> {\r\n</span>        codeGeoItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>patient.address = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Address'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">addr</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          ans<span style=\"color: navy\"><b> -&gt; </b></span>addr.extension = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Extension'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ext</span><b> then</b><span style=\"color: navy\"> {\r\n</span>            ans<span style=\"color: navy\"><b> -&gt; </b></span>ext.url = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/pmsi-code-geo'</span> <i>&quot;codegeourl&quot;</i><span style=\"color: navy\">;</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span>ext.value = <span style=\"color: navy\">(</span>ans.valueCoding<span style=\"color: navy\">)</span> <i>&quot;codegeovalue&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;setcodegeoext&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;setaddress&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractcodegeo&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;extractpmsidemographics&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;processsociodemographics&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Group: Create Locations from geocoding and IRIS data</span>\r\n<b>group </b>CreateLocations<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>QuestionnaireResponse, <b>target</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\"> : </span>Patient, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  <span style=\"color: navy\">// </span><span style=\"color: green\">Extract geocoding data from linkId 4647259356106 &gt; 5491974639955 &gt; 3816475533472</span>\r\n  src.item<b> as </b><span style=\"color: maroon\">socioDemo</span><b> where </b>(linkId = '4647259356106')<b> then</b><span style=\"color: navy\"> {\r\n</span>    socioDemo.item<b> as </b><span style=\"color: maroon\">environment</span><b> where </b>(linkId = '5491974639955')<b> then</b><span style=\"color: navy\"> {\r\n</span>      <span style=\"color: navy\">// </span><span style=\"color: green\">Geocoding locations (repeating group 3816475533472)</span>\r\n      environment.item<b> as </b><span style=\"color: maroon\">geocodingItem</span><b> where </b>(linkId = '3816475533472')<span style=\"color: navy\"><b> -&gt; </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">locationEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        geocodingItem<span style=\"color: navy\"><b> -&gt; </b></span>locationEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Location'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">location</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          geocodingItem<span style=\"color: navy\"><b> -&gt; </b></span>location.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;locationid&quot;</i><span style=\"color: navy\">;</span>\r\n          geocodingItem<span style=\"color: navy\"><b> -&gt; </b></span>location.meta = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Meta'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">meta</span><b> then</b><span style=\"color: navy\"> {\r\n</span>            geocodingItem<span style=\"color: navy\"><b> -&gt; </b></span>meta.profile = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMLocation'</span> <i>&quot;locationprofile&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;locationmeta&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">// </span><span style=\"color: green\">Position with latitude and longitude</span>\r\n          geocodingItem<span style=\"color: navy\"><b> -&gt; </b></span>location.position = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'LocationPosition'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">pos</span><b> then</b><span style=\"color: navy\"> {\r\n</span>            <span style=\"color: navy\">// </span><span style=\"color: green\">Latitude (linkId 3709843054556)</span>\r\n            geocodingItem.item<b> as </b><span style=\"color: maroon\">latItem</span><b> where </b>(linkId = '3709843054556')<b> then</b><span style=\"color: navy\"> {\r\n</span>              latItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>pos.latitude = <span style=\"color: navy\">(</span>ans.valueDecimal<span style=\"color: navy\">)</span> <i>&quot;setlatitude&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">}</span> <i>&quot;extractlatitude&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">// </span><span style=\"color: green\">Longitude (linkId 7651448032665)</span>\r\n            geocodingItem.item<b> as </b><span style=\"color: maroon\">longItem</span><b> where </b>(linkId = '7651448032665')<b> then</b><span style=\"color: navy\"> {\r\n</span>              longItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>pos.longitude = <span style=\"color: navy\">(</span>ans.valueDecimal<span style=\"color: navy\">)</span> <i>&quot;setlongitude&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">}</span> <i>&quot;extractlongitude&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;setposition&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">// </span><span style=\"color: green\">Extension for collection date (linkId 1185653257776)</span>\r\n          <span style=\"color: navy\">// </span><span style=\"color: green\">geocodingItem.item as dateItem where (linkId = '1185653257776') then {             dateItem.answer as ans -&gt; location.extension = create('Extension') as ext then {               ans -&gt; ext.url = 'http://hl7.org/fhir/StructureDefinition/data-collection-date' &quot;date-url&quot;;               ans -&gt; ext.value = (ans.valueDate) &quot;date-value&quot;;             } &quot;set-collection-date&quot;;           } &quot;extract-collection-date&quot;;</span>\r\n          location<span style=\"color: navy\"><b> -&gt; </b></span>locationEntry.request<b> as </b><span style=\"color: maroon\">request</span><b> then</b><span style=\"color: navy\"> {\r\n</span>            location<span style=\"color: navy\"><b> -&gt; </b></span>request.method = <span style=\"color: blue\">'POST'</span> <i>&quot;setmethod&quot;</i><span style=\"color: navy\">;</span>\r\n            location<span style=\"color: navy\"><b> -&gt; </b></span>request.url = <span style=\"color: blue\">'Location'</span> <i>&quot;seturl&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;setrequest&quot;</i><span style=\"color: navy\">;</span>\r\n          location.id<b> as </b><span style=\"color: maroon\">locId</span><span style=\"color: navy\"><b> -&gt; </b></span>locationEntry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">locId</span><span style=\"color: navy\">)</span> <i>&quot;setfullUrl&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;createlocation&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;geocodinglocationentry&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">IRIS locations (repeating item 7621032273792)</span>\r\n      environment.item<b> as </b><span style=\"color: maroon\">irisItem</span><b> where </b>(linkId = '7621032273792')<b> then</b><span style=\"color: navy\"> {\r\n</span>        irisItem.answer<b> as </b><span style=\"color: maroon\">irisAnswer</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">locationEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          irisAnswer<span style=\"color: navy\"><b> -&gt; </b></span>locationEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Location'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">location</span><b> then</b><span style=\"color: navy\"> {\r\n</span>            irisAnswer<span style=\"color: navy\"><b> -&gt; </b></span>location.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;locationid&quot;</i><span style=\"color: navy\">;</span>\r\n            irisAnswer<span style=\"color: navy\"><b> -&gt; </b></span>location.meta = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Meta'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">meta</span><b> then</b><span style=\"color: navy\"> {\r\n</span>              irisAnswer<span style=\"color: navy\"><b> -&gt; </b></span>meta.profile = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMLocation'</span> <i>&quot;locationprofile&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">}</span> <i>&quot;locationmeta&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">// </span><span style=\"color: green\">IRIS code as identifier</span>\r\n            irisAnswer<span style=\"color: navy\"><b> -&gt; </b></span>location.identifier = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Identifier'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">identifier</span><b> then</b><span style=\"color: navy\"> {\r\n</span>              irisAnswer<span style=\"color: navy\"><b> -&gt; </b></span>identifier.system = <span style=\"color: blue\">'urn:oid:2.16.840.1.113883.2.8.1.5.5'</span> <i>&quot;irissystem&quot;</i><span style=\"color: navy\">;</span>\r\n              irisAnswer<span style=\"color: navy\"><b> -&gt; </b></span>identifier.value = <span style=\"color: navy\">(</span>irisAnswer.valueCoding.code<span style=\"color: navy\">)</span> <i>&quot;irisvalue&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">}</span> <i>&quot;setirisidentifier&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">// </span><span style=\"color: green\">Collection date from nested item (linkId 4999580038872)</span>\r\n            <span style=\"color: navy\">// </span><span style=\"color: green\">irisAnswer.item as dateItem where (linkId = '4999580038872') then {               dateItem.answer as ans -&gt; location.extension = create('Extension') as ext then {                 ans -&gt; ext.url = 'http://hl7.org/fhir/StructureDefinition/data-collection-date' &quot;date-url&quot;;                 ans -&gt; ext.value = (ans.valueDate) &quot;date-value&quot;;               } &quot;set-collection-date&quot;;             } &quot;extract-iris-date&quot;;</span>\r\n            location<span style=\"color: navy\"><b> -&gt; </b></span>locationEntry.request<b> as </b><span style=\"color: maroon\">request</span><b> then</b><span style=\"color: navy\"> {\r\n</span>              location<span style=\"color: navy\"><b> -&gt; </b></span>request.method = <span style=\"color: blue\">'POST'</span> <i>&quot;setmethod&quot;</i><span style=\"color: navy\">;</span>\r\n              location<span style=\"color: navy\"><b> -&gt; </b></span>request.url = <span style=\"color: blue\">'Location'</span> <i>&quot;seturl&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">}</span> <i>&quot;setrequest&quot;</i><span style=\"color: navy\">;</span>\r\n            location.id<b> as </b><span style=\"color: maroon\">locId</span><span style=\"color: navy\"><b> -&gt; </b></span>locationEntry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">locId</span><span style=\"color: navy\">)</span> <i>&quot;setfullUrl&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;createirislocation&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;irislocationentry&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;processiris&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;processenvironment&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;processsociodemographicslocation&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Group: Create Encounters from PMSI data</span>\r\n<b>group </b>CreateEncounters<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>QuestionnaireResponse, <b>target</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\"> : </span>Patient, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  <span style=\"color: navy\">// </span><span style=\"color: green\">PMSI data group (linkId 2825244231605) - Note: This can repeat in the structure</span>\r\n  src.item<b> as </b><span style=\"color: maroon\">pmsiItem</span><b> where </b>(linkId = '2825244231605')<span style=\"color: navy\"><b> -&gt; </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">encounterEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    pmsiItem<span style=\"color: navy\"><b> -&gt; </b></span>encounterEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Encounter'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">encounter</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      pmsiItem<span style=\"color: navy\"><b> -&gt; </b></span>encounter.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;encounterid&quot;</i><span style=\"color: navy\">;</span>\r\n      pmsiItem<span style=\"color: navy\"><b> -&gt; </b></span>encounter.meta = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Meta'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">meta</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        pmsiItem<span style=\"color: navy\"><b> -&gt; </b></span>meta.profile = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMEncounter'</span> <i>&quot;encounterprofile&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;encountermeta&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Link to patient</span>\r\n      src<span style=\"color: navy\"><b> -&gt; </b></span> encounter.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><span style=\"color: navy\">, </span> patient.id<b> as </b><span style=\"color: maroon\">patId</span><span style=\"color: navy\">, </span> ref.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patId</span><span style=\"color: navy\">)</span> <i>&quot;setsubject&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Encounter period (start: 5991443718282, end: 6114780320846)</span>\r\n      pmsiItem<span style=\"color: navy\"><b> -&gt; </b></span>encounter.period = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Period'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">period</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        pmsiItem.item<b> as </b><span style=\"color: maroon\">startItem</span><b> where </b>(linkId = '5991443718282')<b> then</b><span style=\"color: navy\"> {\r\n</span>          startItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>period.start = <span style=\"color: navy\">(</span>ans.valueDate<span style=\"color: navy\">)</span> <i>&quot;setstart&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;extractstart&quot;</i><span style=\"color: navy\">;</span>\r\n        pmsiItem.item<b> as </b><span style=\"color: maroon\">endItem</span><b> where </b>(linkId = '6114780320846')<b> then</b><span style=\"color: navy\"> {\r\n</span>          endItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>period.end = <span style=\"color: navy\">(</span>ans.valueDate<span style=\"color: navy\">)</span> <i>&quot;setend&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;extractend&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;setperiod&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Mode d'entrée (linkId 6172398101212)</span>\r\n      pmsiItem.item<b> as </b><span style=\"color: maroon\">modeInItem</span><b> where </b>(linkId = '6172398101212') <i>&quot;extractmodein&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Mode de sortie (linkId 3354867075704)</span>\r\n      pmsiItem.item<b> as </b><span style=\"color: maroon\">modeOutItem</span><b> where </b>(linkId = '3354867075704') <i>&quot;extractmodeout&quot;</i><span style=\"color: navy\">;</span>\r\n      src<span style=\"color: navy\"><b> -&gt; </b></span> encounter.id<b> as </b><span style=\"color: maroon\">encId</span><span style=\"color: navy\">, </span> encounterEntry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">encId</span><span style=\"color: navy\">)</span> <i>&quot;setfullUrl&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Create nested Conditions and Procedures</span>\r\n      pmsiItem<b> then </b>CreateConditions<span style=\"color: navy\">(</span><span style=\"color: maroon\">pmsiItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">encounter</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createconditions&quot;</i><span style=\"color: navy\">;</span>\r\n      pmsiItem<b> then </b>CreateProcedures<span style=\"color: navy\">(</span><span style=\"color: maroon\">pmsiItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">encounter</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createprocedures&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;createencounter&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;encounterentry&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Group: Create Conditions from nested diagnostics</span>\r\n<b>group </b>CreateConditions<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">pmsiItem</span>, <b>target</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\"> : </span>Patient, <b>target</b> <span style=\"color: maroon\">encounter</span><span style=\"color: navy\"> : </span>Encounter, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  <span style=\"color: navy\">// </span><span style=\"color: green\">Diagnostics group (linkId 9391816419630) - can repeat</span>\r\n  pmsiItem.item<b> as </b><span style=\"color: maroon\">diagGroup</span><b> where </b>(linkId = '9391816419630')<span style=\"color: navy\"><b> -&gt; </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">conditionEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    diagGroup<span style=\"color: navy\"><b> -&gt; </b></span>conditionEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Condition'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">condition</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      diagGroup<span style=\"color: navy\"><b> -&gt; </b></span>condition.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;conditionid&quot;</i><span style=\"color: navy\">;</span>\r\n      diagGroup<span style=\"color: navy\"><b> -&gt; </b></span>condition.meta = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Meta'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">meta</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        diagGroup<span style=\"color: navy\"><b> -&gt; </b></span>meta.profile = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMCondition'</span> <i>&quot;conditionprofile&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;conditionmeta&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Link to patient</span>\r\n      diagGroup<span style=\"color: navy\"><b> -&gt; </b></span> condition.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><span style=\"color: navy\">, </span> patient.id<b> as </b><span style=\"color: maroon\">patId</span><span style=\"color: navy\">, </span> ref.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patId</span><span style=\"color: navy\">)</span> <i>&quot;setsubject&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Link to encounter</span>\r\n      diagGroup<span style=\"color: navy\"><b> -&gt; </b></span> encounter.id<b> as </b><span style=\"color: maroon\">encId</span><span style=\"color: navy\">, </span> condition.encounter = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><span style=\"color: navy\">, </span> ref.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Encounter/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">encId</span><span style=\"color: navy\">)</span> <i>&quot;setencounter&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Diagnostic code (linkId 5505101189372) - CIM-10</span>\r\n      diagGroup.item<b> as </b><span style=\"color: maroon\">diagCodeItem</span><b> where </b>(linkId = '5505101189372')<b> then</b><span style=\"color: navy\"> {\r\n</span>        diagCodeItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>condition.code = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">code</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          ans<span style=\"color: navy\"><b> -&gt; </b></span>code.coding = <span style=\"color: navy\">(</span>ans.valueCoding<span style=\"color: navy\">)</span> <i>&quot;setcoding&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;setcode&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractdiagcode&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Type de diagnostic (linkId 6427586743735) - DP/DAS/DR</span>\r\n      diagGroup.item<b> as </b><span style=\"color: maroon\">diagTypeItem</span><b> where </b>(linkId = '6427586743735')<b> then</b><span style=\"color: navy\"> {\r\n</span>        diagTypeItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>condition.category = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">category</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          ans<span style=\"color: navy\"><b> -&gt; </b></span>category.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span>            ans<span style=\"color: navy\"><b> -&gt; </b></span>coding.system = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/CodeSystem/pmsi-mco-diag-type'</span> <i>&quot;diagtypesystem&quot;</i><span style=\"color: navy\">;</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span>coding.code = <span style=\"color: navy\">(</span>ans.valueCoding.code<span style=\"color: navy\">)</span> <i>&quot;diagtypecode&quot;</i><span style=\"color: navy\">;</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span>coding.display = <span style=\"color: navy\">(</span>ans.valueCoding.display<span style=\"color: navy\">)</span> <i>&quot;diagtypedisplay&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;setcategorycoding&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;setcategory&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractdiagtype&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Recorded date (linkId 7114466839467)</span>\r\n      diagGroup.item<b> as </b><span style=\"color: maroon\">dateItem</span><b> where </b>(linkId = '7114466839467')<b> then</b><span style=\"color: navy\"> {\r\n</span>        dateItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>condition.recordedDate = <span style=\"color: navy\">(</span>ans.valueDate<span style=\"color: navy\">)</span> <i>&quot;setrecordeddate&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractrecordeddate&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;createcondition&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;conditionentry&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Group: Create Procedures from nested actes</span>\r\n<b>group </b>CreateProcedures<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">pmsiItem</span>, <b>target</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\"> : </span>Patient, <b>target</b> <span style=\"color: maroon\">encounter</span><span style=\"color: navy\"> : </span>Encounter, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  <span style=\"color: navy\">// </span><span style=\"color: green\">Actes group (linkId 591926901726) - can repeat</span>\r\n  pmsiItem.item<b> as </b><span style=\"color: maroon\">acteGroup</span><b> where </b>(linkId = '591926901726')<span style=\"color: navy\"><b> -&gt; </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">procedureEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    acteGroup<span style=\"color: navy\"><b> -&gt; </b></span>procedureEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Procedure'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">procedure</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      acteGroup<span style=\"color: navy\"><b> -&gt; </b></span>procedure.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;procedureid&quot;</i><span style=\"color: navy\">;</span>\r\n      acteGroup<span style=\"color: navy\"><b> -&gt; </b></span>procedure.meta = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Meta'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">meta</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        acteGroup<span style=\"color: navy\"><b> -&gt; </b></span>meta.profile = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMProcedure'</span> <i>&quot;procedureprofile&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;proceduremeta&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Link to patient</span>\r\n      acteGroup<span style=\"color: navy\"><b> -&gt; </b></span> procedure.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><span style=\"color: navy\">, </span> patient.id<b> as </b><span style=\"color: maroon\">patId</span><span style=\"color: navy\">, </span> ref.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patId</span><span style=\"color: navy\">)</span> <i>&quot;setsubject&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Link to encounter</span>\r\n      acteGroup<span style=\"color: navy\"><b> -&gt; </b></span> encounter.id<b> as </b><span style=\"color: maroon\">encId</span><span style=\"color: navy\">, </span> procedure.encounter = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><span style=\"color: navy\">, </span> ref.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Encounter/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">encId</span><span style=\"color: navy\">)</span> <i>&quot;setencounter&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Acte code (linkId 7758110033600) - CCAM</span>\r\n      acteGroup.item<b> as </b><span style=\"color: maroon\">acteCodeItem</span><b> where </b>(linkId = '7758110033600')<b> then</b><span style=\"color: navy\"> {\r\n</span>        acteCodeItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>procedure.code = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">code</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          ans<span style=\"color: navy\"><b> -&gt; </b></span>code.coding = <span style=\"color: navy\">(</span>ans.valueCoding<span style=\"color: navy\">)</span> <i>&quot;setcoding&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;setcode&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractactecode&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Date de l'acte (linkId 5066866286682)</span>\r\n      acteGroup.item<b> as </b><span style=\"color: maroon\">dateItem</span><b> where </b>(linkId = '5066866286682')<b> then</b><span style=\"color: navy\"> {\r\n</span>        dateItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>procedure.performed = <span style=\"color: navy\">(</span>ans.valueDateTime<span style=\"color: navy\">)</span> <i>&quot;setperformed&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractperformeddate&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;createprocedure&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;procedureentry&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Group: Create Medication Requests</span>\r\n<b>group </b>CreateMedicationRequests<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>QuestionnaireResponse, <b>target</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\"> : </span>Patient, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  <span style=\"color: navy\">// </span><span style=\"color: green\">Exposition médicamenteuse (linkId 817801935685)</span>\r\n  src.item<b> as </b><span style=\"color: maroon\">medExpoGroup</span><b> where </b>(linkId = '817801935685')<b> then</b><span style=\"color: navy\"> {\r\n</span>    <span style=\"color: navy\">// </span><span style=\"color: green\">Médicament prescrit (linkId 156631794800) - repeating</span>\r\n    medExpoGroup.item<b> as </b><span style=\"color: maroon\">prescribedGroup</span><b> where </b>(linkId = '156631794800')<span style=\"color: navy\"><b> -&gt; </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">medReqEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      prescribedGroup<span style=\"color: navy\"><b> -&gt; </b></span>medReqEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'MedicationRequest'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">medReq</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        prescribedGroup<span style=\"color: navy\"><b> -&gt; </b></span>medReq.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;medreqid&quot;</i><span style=\"color: navy\">;</span>\r\n        prescribedGroup<span style=\"color: navy\"><b> -&gt; </b></span>medReq.meta = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Meta'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">meta</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          prescribedGroup<span style=\"color: navy\"><b> -&gt; </b></span>meta.profile = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMMedicationRequest'</span> <i>&quot;medreqprofile&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;medreqmeta&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">// </span><span style=\"color: green\">Link to patient</span>\r\n        prescribedGroup<span style=\"color: navy\"><b> -&gt; </b></span> medReq.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><span style=\"color: navy\">, </span> patient.id<b> as </b><span style=\"color: maroon\">patId</span><span style=\"color: navy\">, </span> ref.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patId</span><span style=\"color: navy\">)</span> <i>&quot;setsubject&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">// </span><span style=\"color: green\">Status and intent</span>\r\n        prescribedGroup<span style=\"color: navy\"><b> -&gt; </b></span>medReq.status = <span style=\"color: blue\">'active'</span> <i>&quot;setstatus&quot;</i><span style=\"color: navy\">;</span>\r\n        prescribedGroup<span style=\"color: navy\"><b> -&gt; </b></span>medReq.intent = <span style=\"color: blue\">'order'</span> <i>&quot;setintent&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">// </span><span style=\"color: green\">Create Medication resource and reference</span>\r\n        prescribedGroup<span style=\"color: navy\"><b> -&gt; </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">medEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          prescribedGroup<span style=\"color: navy\"><b> -&gt; </b></span>medEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Medication'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">medication</span><b> then</b><span style=\"color: navy\"> {\r\n</span>            prescribedGroup<span style=\"color: navy\"><b> -&gt; </b></span>medication.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;medid&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">// </span><span style=\"color: green\">ATC code from nested items</span>\r\n            prescribedGroup.item<b> as </b><span style=\"color: maroon\">atcItem</span><b> where </b>(linkId.contains('ATC'))<b> then</b><span style=\"color: navy\"> {\r\n</span>              atcItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>medication.code = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">code</span><b> then</b><span style=\"color: navy\"> {\r\n</span>                ans<span style=\"color: navy\"><b> -&gt; </b></span>code.coding = <span style=\"color: navy\">(</span>ans.valueCoding<span style=\"color: navy\">)</span> <i>&quot;setatccoding&quot;</i><span style=\"color: navy\">;</span>\r\n              <span style=\"color: navy\">}</span> <i>&quot;setmedcode&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">}</span> <i>&quot;extractatc&quot;</i><span style=\"color: navy\">;</span>\r\n            prescribedGroup<span style=\"color: navy\"><b> -&gt; </b></span> medication.id<b> as </b><span style=\"color: maroon\">medId</span><span style=\"color: navy\">, </span> medEntry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">medId</span><span style=\"color: navy\">)</span> <i>&quot;setfullUrl&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">// </span><span style=\"color: green\">Link MedicationRequest to Medication</span>\r\n            prescribedGroup<span style=\"color: navy\"><b> -&gt; </b></span> medication.id<b> as </b><span style=\"color: maroon\">medId</span><span style=\"color: navy\">, </span> medReq.medication = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><span style=\"color: navy\">, </span> ref.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Medication/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">medId</span><span style=\"color: navy\">)</span> <i>&quot;setmedicationreference&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;createmedication&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;medicationentry&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">// </span><span style=\"color: green\">Dosage instructions</span>\r\n        prescribedGroup<span style=\"color: navy\"><b> -&gt; </b></span>medReq.dosageInstruction = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Dosage'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">dosage</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          <span style=\"color: navy\">// </span><span style=\"color: green\">Route</span>\r\n          prescribedGroup.item<b> as </b><span style=\"color: maroon\">routeItem</span><b> where </b>(linkId.contains('voie'))<b> then</b><span style=\"color: navy\"> {\r\n</span>            routeItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>dosage.route = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">route</span><b> then</b><span style=\"color: navy\"> {\r\n</span>              ans<span style=\"color: navy\"><b> -&gt; </b></span>route.coding = <span style=\"color: navy\">(</span>ans.valueCoding<span style=\"color: navy\">)</span> <i>&quot;setroutecoding&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">}</span> <i>&quot;setroute&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;extractroute&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">// </span><span style=\"color: green\">Timing</span>\r\n          prescribedGroup.item<b> as </b><span style=\"color: maroon\">timingItem</span><b> where </b>(linkId.contains('timing') or linkId.contains('fréquence'))<b> then</b><span style=\"color: navy\"> {\r\n</span>            timingItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>dosage.timing = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Timing'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">timing</span><b> then</b><span style=\"color: navy\"> {\r\n</span>              ans<span style=\"color: navy\"><b> -&gt; </b></span>timing.repeat = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'TimingRepeat'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">repeat</span> <i>&quot;settiming&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">}</span> <i>&quot;settimingstructure&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;extracttiming&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;setdosage&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;createmedreq&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;medreqentry&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;processmedexpo&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Group: Create Medication Administrations</span>\r\n<b>group </b>CreateMedicationAdministrations<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>QuestionnaireResponse, <b>target</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\"> : </span>Patient, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  <span style=\"color: navy\">// </span><span style=\"color: green\">Exposition médicamenteuse (linkId 817801935685)</span>\r\n  src.item<b> as </b><span style=\"color: maroon\">medExpoGroup</span><b> where </b>(linkId = '817801935685')<b> then</b><span style=\"color: navy\"> {\r\n</span>    <span style=\"color: navy\">// </span><span style=\"color: green\">Médicament administré (linkId 266852453304) - repeating</span>\r\n    medExpoGroup.item<b> as </b><span style=\"color: maroon\">adminGroup</span><b> where </b>(linkId = '266852453304')<span style=\"color: navy\"><b> -&gt; </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">medAdminEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      adminGroup<span style=\"color: navy\"><b> -&gt; </b></span>medAdminEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'MedicationAdministration'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">medAdmin</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        adminGroup<span style=\"color: navy\"><b> -&gt; </b></span>medAdmin.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;medadminid&quot;</i><span style=\"color: navy\">;</span>\r\n        adminGroup<span style=\"color: navy\"><b> -&gt; </b></span>medAdmin.meta = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Meta'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">meta</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          adminGroup<span style=\"color: navy\"><b> -&gt; </b></span>meta.profile = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMMedicationAdministration'</span> <i>&quot;medadminprofile&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;medadminmeta&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">// </span><span style=\"color: green\">Link to patient</span>\r\n        adminGroup<span style=\"color: navy\"><b> -&gt; </b></span> medAdmin.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><span style=\"color: navy\">, </span> patient.id<b> as </b><span style=\"color: maroon\">patId</span><span style=\"color: navy\">, </span> ref.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patId</span><span style=\"color: navy\">)</span> <i>&quot;setsubject&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">// </span><span style=\"color: green\">Status</span>\r\n        adminGroup<span style=\"color: navy\"><b> -&gt; </b></span>medAdmin.status = <span style=\"color: blue\">'completed'</span> <i>&quot;setstatus&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">// </span><span style=\"color: green\">Create Medication resource and reference</span>\r\n        adminGroup<span style=\"color: navy\"><b> -&gt; </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">medEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          adminGroup<span style=\"color: navy\"><b> -&gt; </b></span>medEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Medication'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">medication</span><b> then</b><span style=\"color: navy\"> {\r\n</span>            adminGroup<span style=\"color: navy\"><b> -&gt; </b></span>medication.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;medid&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">// </span><span style=\"color: green\">ATC code from nested items</span>\r\n            adminGroup.item<b> as </b><span style=\"color: maroon\">atcItem</span><b> where </b>(linkId.contains('ATC'))<b> then</b><span style=\"color: navy\"> {\r\n</span>              atcItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>medication.code = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">code</span><b> then</b><span style=\"color: navy\"> {\r\n</span>                ans<span style=\"color: navy\"><b> -&gt; </b></span>code.coding = <span style=\"color: navy\">(</span>ans.valueCoding<span style=\"color: navy\">)</span> <i>&quot;setatccoding&quot;</i><span style=\"color: navy\">;</span>\r\n              <span style=\"color: navy\">}</span> <i>&quot;setmedcode&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">}</span> <i>&quot;extractatc&quot;</i><span style=\"color: navy\">;</span>\r\n            adminGroup<span style=\"color: navy\"><b> -&gt; </b></span> medication.id<b> as </b><span style=\"color: maroon\">medId</span><span style=\"color: navy\">, </span> medEntry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Medication/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">medId</span><span style=\"color: navy\">)</span> <i>&quot;setfullUrl&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">// </span><span style=\"color: green\">Link MedicationAdministration to Medication</span>\r\n            adminGroup<span style=\"color: navy\"><b> -&gt; </b></span> medication.id<b> as </b><span style=\"color: maroon\">medId</span><span style=\"color: navy\">, </span> medAdmin.medication = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><span style=\"color: navy\">, </span> ref.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">medId</span><span style=\"color: navy\">)</span> <i>&quot;setmedicationreference&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;createmedication&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;medicationentry&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">// </span><span style=\"color: green\">Effective period</span>\r\n        adminGroup<span style=\"color: navy\"><b> -&gt; </b></span>medAdmin.effective = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Period'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">period</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          adminGroup.item<b> as </b><span style=\"color: maroon\">startItem</span><b> where </b>(linkId.contains('début'))<b> then</b><span style=\"color: navy\"> {\r\n</span>            startItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>period.start = <span style=\"color: navy\">(</span>ans.valueDateTime<span style=\"color: navy\">)</span> <i>&quot;setstart&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;extractstart&quot;</i><span style=\"color: navy\">;</span>\r\n          adminGroup.item<b> as </b><span style=\"color: maroon\">endItem</span><b> where </b>(linkId.contains('fin'))<b> then</b><span style=\"color: navy\"> {\r\n</span>            endItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>period.end = <span style=\"color: navy\">(</span>ans.valueDateTime<span style=\"color: navy\">)</span> <i>&quot;setend&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;extractend&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;seteffective&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">// </span><span style=\"color: green\">Dosage</span>\r\n        adminGroup<span style=\"color: navy\"><b> -&gt; </b></span>medAdmin.dosage = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Dosage'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">dosage</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          <span style=\"color: navy\">// </span><span style=\"color: green\">Route</span>\r\n          adminGroup.item<b> as </b><span style=\"color: maroon\">routeItem</span><b> where </b>(linkId.contains('voie'))<b> then</b><span style=\"color: navy\"> {\r\n</span>            routeItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>dosage.route = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">route</span><b> then</b><span style=\"color: navy\"> {\r\n</span>              ans<span style=\"color: navy\"><b> -&gt; </b></span>route.coding = <span style=\"color: navy\">(</span>ans.valueCoding<span style=\"color: navy\">)</span> <i>&quot;setroutecoding&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">}</span> <i>&quot;setroute&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;extractroute&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">// </span><span style=\"color: green\">Dose</span>\r\n          adminGroup.item<b> as </b><span style=\"color: maroon\">doseItem</span><b> where </b>(linkId.contains('dose'))<b> then</b><span style=\"color: navy\"> {\r\n</span>            doseItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>dosage.dose = <span style=\"color: navy\">(</span>ans.valueQuantity<span style=\"color: navy\">)</span> <i>&quot;setdose&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;extractdose&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;setdosage&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;createmedadmin&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;medadminentry&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;processmedexpoadmin&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Group: Create Vital Sign Observations</span>\r\n<b>group </b>CreateVitalSignObservations<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>QuestionnaireResponse, <b>target</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\"> : </span>Patient, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  <span style=\"color: navy\">// </span><span style=\"color: green\">Examen clinique (linkId 214880328197)</span>\r\n  src.item<b> as </b><span style=\"color: maroon\">examGroup</span><b> where </b>(linkId = '214880328197')<b> then</b><span style=\"color: navy\"> {\r\n</span>    <span style=\"color: navy\">// </span><span style=\"color: green\">Dossier de soins (linkId 305831246173) - repeating</span>\r\n    examGroup.item<b> as </b><span style=\"color: maroon\">dossierGroup</span><b> where </b>(linkId = '305831246173')<b> then</b><span style=\"color: navy\"> {\r\n</span>      <span style=\"color: navy\">// </span><span style=\"color: green\">Height (linkId 4846902346416)</span>\r\n      dossierGroup.item<b> as </b><span style=\"color: maroon\">heightItem</span><b> where </b>(linkId = '4846902346416')<b> then</b><span style=\"color: navy\"> {\r\n</span>        heightItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">obsEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          ans<span style=\"color: navy\"><b> -&gt; </b></span>obsEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obs</span><b> then</b><span style=\"color: navy\"> {\r\n</span>            ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;obsid&quot;</i><span style=\"color: navy\">;</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span> obs.id<b> as </b><span style=\"color: maroon\">obsId</span><span style=\"color: navy\">, </span> obsEntry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsId</span><span style=\"color: navy\">)</span> <i>&quot;setfullUrl&quot;</i><span style=\"color: navy\">;</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.meta = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Meta'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">meta</span><b> then</b><span style=\"color: navy\"> {\r\n</span>              ans<span style=\"color: navy\"><b> -&gt; </b></span>meta.profile = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMObservationBodyHeight'</span> <i>&quot;obsprofile&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">}</span> <i>&quot;obsmeta&quot;</i><span style=\"color: navy\">;</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.status = <span style=\"color: blue\">'final'</span> <i>&quot;obsstatus&quot;</i><span style=\"color: navy\">;</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.category = <b>cc</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/observation-category'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'vital-signs'</span><span style=\"color: navy\">)</span> <i>&quot;obscategory&quot;</i><span style=\"color: navy\">;</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.code = <b>cc</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://loinc.org'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'8302-2'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'Body height'</span><span style=\"color: navy\">)</span> <i>&quot;obscode&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">// </span><span style=\"color: green\">Link to patient</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span> obs.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><span style=\"color: navy\">, </span> patient.id<b> as </b><span style=\"color: maroon\">patId</span><span style=\"color: navy\">, </span> ref.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patId</span><span style=\"color: navy\">)</span> <i>&quot;setsubject&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">// </span><span style=\"color: green\">Value</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.value = <span style=\"color: navy\">(</span>ans.valueQuantity<span style=\"color: navy\">)</span> <i>&quot;setvalue&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">// </span><span style=\"color: green\">Effective date from nested item</span>\r\n            heightItem.item<b> as </b><span style=\"color: maroon\">dateItem</span><b> where </b>(linkId.contains('Date'))<b> then</b><span style=\"color: navy\"> {\r\n</span>              dateItem.answer<b> as </b><span style=\"color: maroon\">dateAns</span><span style=\"color: navy\"><b> -&gt; </b></span>obs.effective = <span style=\"color: navy\">(</span>dateAns.valueDate<span style=\"color: navy\">)</span> <i>&quot;seteffective&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">}</span> <i>&quot;extracteffective&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;createheightobs&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;heightobsentry&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractheight&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Weight (linkId 451513217936)</span>\r\n      dossierGroup.item<b> as </b><span style=\"color: maroon\">weightItem</span><b> where </b>(linkId = '451513217936')<b> then</b><span style=\"color: navy\"> {\r\n</span>        weightItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">obsEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          ans<span style=\"color: navy\"><b> -&gt; </b></span>obsEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obs</span><b> then</b><span style=\"color: navy\"> {\r\n</span>            ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;obsid&quot;</i><span style=\"color: navy\">;</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span> obs.id<b> as </b><span style=\"color: maroon\">obsId</span><span style=\"color: navy\">, </span> obsEntry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsId</span><span style=\"color: navy\">)</span> <i>&quot;setfullUrl&quot;</i><span style=\"color: navy\">;</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.meta = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Meta'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">meta</span><b> then</b><span style=\"color: navy\"> {\r\n</span>              ans<span style=\"color: navy\"><b> -&gt; </b></span>meta.profile = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMObservationBodyWeight'</span> <i>&quot;obsprofile&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">}</span> <i>&quot;obsmeta&quot;</i><span style=\"color: navy\">;</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.status = <span style=\"color: blue\">'final'</span> <i>&quot;obsstatus&quot;</i><span style=\"color: navy\">;</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.category = <b>cc</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/observation-category'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'vital-signs'</span><span style=\"color: navy\">)</span> <i>&quot;obscategory&quot;</i><span style=\"color: navy\">;</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.code = <b>cc</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://loinc.org'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'29463-7'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'Body weight'</span><span style=\"color: navy\">)</span> <i>&quot;obscode&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">// </span><span style=\"color: green\">Link to patient</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span> obs.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><span style=\"color: navy\">, </span> patient.id<b> as </b><span style=\"color: maroon\">patId</span><span style=\"color: navy\">, </span> ref.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patId</span><span style=\"color: navy\">)</span> <i>&quot;setsubject&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">// </span><span style=\"color: green\">Value</span>\r\n            ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.value = <span style=\"color: navy\">(</span>ans.valueQuantity<span style=\"color: navy\">)</span> <i>&quot;setvalue&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">// </span><span style=\"color: green\">Effective date from nested item</span>\r\n            weightItem.item<b> as </b><span style=\"color: maroon\">dateItem</span><b> where </b>(linkId.contains('Date'))<b> then</b><span style=\"color: navy\"> {\r\n</span>              dateItem.answer<b> as </b><span style=\"color: maroon\">dateAns</span><span style=\"color: navy\"><b> -&gt; </b></span>obs.effective = <span style=\"color: navy\">(</span>dateAns.valueDate<span style=\"color: navy\">)</span> <i>&quot;seteffective&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">}</span> <i>&quot;extracteffective&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;createweightobs&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;weightobsentry&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractweight&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Blood Pressure - need both systolic and diastolic</span>\r\n      dossierGroup.item<b> as </b><span style=\"color: maroon\">sysItem</span><b> where </b>(linkId = '4160905247955')<b> then</b><span style=\"color: navy\"> {\r\n</span>        sysItem.answer<b> as </b><span style=\"color: maroon\">sysAns</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          dossierGroup.item<b> as </b><span style=\"color: maroon\">diaItem</span><b> where </b>(linkId = '848797127998')<b> then</b><span style=\"color: navy\"> {\r\n</span>            diaItem.answer<b> as </b><span style=\"color: maroon\">diaAns</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">obsEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span>              sysAns<span style=\"color: navy\"><b> -&gt; </b></span>obsEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obs</span><b> then</b><span style=\"color: navy\"> {\r\n</span>                sysAns<span style=\"color: navy\"><b> -&gt; </b></span>obs.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;obsid&quot;</i><span style=\"color: navy\">;</span>\r\n                sysAns<span style=\"color: navy\"><b> -&gt; </b></span> obs.id<b> as </b><span style=\"color: maroon\">obsId</span><span style=\"color: navy\">, </span> obsEntry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsId</span><span style=\"color: navy\">)</span> <i>&quot;setfullUrl&quot;</i><span style=\"color: navy\">;</span>\r\n                sysAns<span style=\"color: navy\"><b> -&gt; </b></span>obs.meta = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Meta'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">meta</span><b> then</b><span style=\"color: navy\"> {\r\n</span>                  sysAns<span style=\"color: navy\"><b> -&gt; </b></span>meta.profile = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMObservationBloodPressure'</span> <i>&quot;obsprofile&quot;</i><span style=\"color: navy\">;</span>\r\n                <span style=\"color: navy\">}</span> <i>&quot;obsmeta&quot;</i><span style=\"color: navy\">;</span>\r\n                sysAns<span style=\"color: navy\"><b> -&gt; </b></span>obs.status = <span style=\"color: blue\">'final'</span> <i>&quot;obsstatus&quot;</i><span style=\"color: navy\">;</span>\r\n                sysAns<span style=\"color: navy\"><b> -&gt; </b></span>obs.category = <b>cc</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/observation-category'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'vital-signs'</span><span style=\"color: navy\">)</span> <i>&quot;obscategory&quot;</i><span style=\"color: navy\">;</span>\r\n                sysAns<span style=\"color: navy\"><b> -&gt; </b></span>obs.code = <b>cc</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://loinc.org'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'85354-9'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'Blood pressure panel'</span><span style=\"color: navy\">)</span> <i>&quot;obscode&quot;</i><span style=\"color: navy\">;</span>\r\n                <span style=\"color: navy\">// </span><span style=\"color: green\">Link to patient</span>\r\n                sysAns<span style=\"color: navy\"><b> -&gt; </b></span> obs.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><span style=\"color: navy\">, </span> patient.id<b> as </b><span style=\"color: maroon\">patId</span><span style=\"color: navy\">, </span> ref.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patId</span><span style=\"color: navy\">)</span> <i>&quot;setsubject&quot;</i><span style=\"color: navy\">;</span>\r\n                <span style=\"color: navy\">// </span><span style=\"color: green\">Systolic component</span>\r\n                sysAns<span style=\"color: navy\"><b> -&gt; </b></span>obs.component = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">sysComp</span><b> then</b><span style=\"color: navy\"> {\r\n</span>                  sysAns<span style=\"color: navy\"><b> -&gt; </b></span>sysComp.code = <b>cc</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://loinc.org'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'8480-6'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'Systolic blood pressure'</span><span style=\"color: navy\">)</span> <i>&quot;syscode&quot;</i><span style=\"color: navy\">;</span>\r\n                  sysAns<span style=\"color: navy\"><b> -&gt; </b></span>sysComp.value = <span style=\"color: navy\">(</span>sysAns.valueQuantity<span style=\"color: navy\">)</span> <i>&quot;sysvalue&quot;</i><span style=\"color: navy\">;</span>\r\n                <span style=\"color: navy\">}</span> <i>&quot;setsystolic&quot;</i><span style=\"color: navy\">;</span>\r\n                <span style=\"color: navy\">// </span><span style=\"color: green\">Diastolic component</span>\r\n                diaAns<span style=\"color: navy\"><b> -&gt; </b></span>obs.component = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">diaComp</span><b> then</b><span style=\"color: navy\"> {\r\n</span>                  diaAns<span style=\"color: navy\"><b> -&gt; </b></span>diaComp.code = <b>cc</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://loinc.org'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'8462-4'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'Diastolic blood pressure'</span><span style=\"color: navy\">)</span> <i>&quot;diacode&quot;</i><span style=\"color: navy\">;</span>\r\n                  diaAns<span style=\"color: navy\"><b> -&gt; </b></span>diaComp.value = <span style=\"color: navy\">(</span>diaAns.valueQuantity<span style=\"color: navy\">)</span> <i>&quot;diavalue&quot;</i><span style=\"color: navy\">;</span>\r\n                <span style=\"color: navy\">}</span> <i>&quot;setdiastolic&quot;</i><span style=\"color: navy\">;</span>\r\n                <span style=\"color: navy\">// </span><span style=\"color: green\">Effective date from nested item</span>\r\n                sysItem.item<b> as </b><span style=\"color: maroon\">dateItem</span><b> where </b>(linkId.contains('Date'))<b> then</b><span style=\"color: navy\"> {\r\n</span>                  dateItem.answer<b> as </b><span style=\"color: maroon\">dateAns</span><span style=\"color: navy\"><b> -&gt; </b></span>obs.effective = <span style=\"color: navy\">(</span>dateAns.valueDate<span style=\"color: navy\">)</span> <i>&quot;seteffective&quot;</i><span style=\"color: navy\">;</span>\r\n                <span style=\"color: navy\">}</span> <i>&quot;extracteffective&quot;</i><span style=\"color: navy\">;</span>\r\n              <span style=\"color: navy\">}</span> <i>&quot;createbpobs&quot;</i><span style=\"color: navy\">;</span>\r\n            <span style=\"color: navy\">}</span> <i>&quot;bpobsentr&quot;</i><span style=\"color: navy\">;</span>\r\n          <span style=\"color: navy\">}</span> <i>&quot;extractdiastolic&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;processsystolic&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractbloodpressure&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;processdossier&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;processexam&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Group: Create Laboratory Observations</span>\r\n<b>group </b>CreateLaboratoryObservations<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>QuestionnaireResponse, <b>target</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\"> : </span>Patient, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  <span style=\"color: navy\">// </span><span style=\"color: green\">Biologie group (linkId 7702944131447)</span>\r\n  src.item<b> as </b><span style=\"color: maroon\">bioGroup</span><b> where </b>(linkId = '7702944131447')<b> then</b><span style=\"color: navy\"> {\r\n</span>    <span style=\"color: navy\">// </span><span style=\"color: green\">Fonction rénale (linkId 5241323453538)</span>\r\n    bioGroup.item<b> as </b><span style=\"color: maroon\">renalGroup</span><b> where </b>(linkId = '5241323453538')<b> then</b><span style=\"color: navy\"> {\r\n</span>      <span style=\"color: navy\">// </span><span style=\"color: green\">Urée (linkId 7169026818760)</span>\r\n      renalGroup.item<b> as </b><span style=\"color: maroon\">ureaItem</span><b> where </b>(linkId = '7169026818760')<b> then</b><span style=\"color: navy\"> {\r\n</span>        ureaItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">ureaItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createureaobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extracturea&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Créatininémie (linkId 500408205043)</span>\r\n      renalGroup.item<b> as </b><span style=\"color: maroon\">creatItem</span><b> where </b>(linkId = '500408205043')<b> then</b><span style=\"color: navy\"> {\r\n</span>        creatItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">creatItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createcreatobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractcreat&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">DFG (linkId 786621340679)</span>\r\n      renalGroup.item<b> as </b><span style=\"color: maroon\">dfgItem</span><b> where </b>(linkId = '786621340679')<b> then</b><span style=\"color: navy\"> {\r\n</span>        dfgItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dfgItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createdfgobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractdfg&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;processrenal&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">// </span><span style=\"color: green\">Hémogramme (linkId 419282985970)</span>\r\n    bioGroup.item<b> as </b><span style=\"color: maroon\">hemoGroup</span><b> where </b>(linkId = '419282985970')<b> then</b><span style=\"color: navy\"> {\r\n</span>      <span style=\"color: navy\">// </span><span style=\"color: green\">Leucocytes (linkId 210077225604)</span>\r\n      hemoGroup.item<b> as </b><span style=\"color: maroon\">leukoItem</span><b> where </b>(linkId = '210077225604')<b> then</b><span style=\"color: navy\"> {\r\n</span>        leukoItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">leukoItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createleukoobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractleuko&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Hémoglobine (linkId 304159088493)</span>\r\n      hemoGroup.item<b> as </b><span style=\"color: maroon\">hemoItem</span><b> where </b>(linkId = '304159088493')<b> then</b><span style=\"color: navy\"> {\r\n</span>        hemoItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">hemoItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createhemoobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extracthemo&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Hématocrite (linkId 5687959006070)</span>\r\n      hemoGroup.item<b> as </b><span style=\"color: maroon\">hematItem</span><b> where </b>(linkId = '5687959006070')<b> then</b><span style=\"color: navy\"> {\r\n</span>        hematItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">hematItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createhematobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extracthemat&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Erythrocytes (linkId 8697447896867)</span>\r\n      hemoGroup.item<b> as </b><span style=\"color: maroon\">eryItem</span><b> where </b>(linkId = '8697447896867')<b> then</b><span style=\"color: navy\"> {\r\n</span>        eryItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">eryItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createeryobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractery&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">VGM (linkId 5584978899134)</span>\r\n      hemoGroup.item<b> as </b><span style=\"color: maroon\">vgmItem</span><b> where </b>(linkId = '5584978899134')<b> then</b><span style=\"color: navy\"> {\r\n</span>        vgmItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">vgmItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createvgmobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractvgm&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Plaquettes (linkId 2881119993430)</span>\r\n      hemoGroup.item<b> as </b><span style=\"color: maroon\">platItem</span><b> where </b>(linkId = '2881119993430')<b> then</b><span style=\"color: navy\"> {\r\n</span>        platItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">platItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createplatobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractplat&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Neutrophiles (linkId 7408951746270)</span>\r\n      hemoGroup.item<b> as </b><span style=\"color: maroon\">neutItem</span><b> where </b>(linkId = '7408951746270')<b> then</b><span style=\"color: navy\"> {\r\n</span>        neutItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">neutItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createneutobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractneut&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Lymphocytes (linkId 809808816195)</span>\r\n      hemoGroup.item<b> as </b><span style=\"color: maroon\">lymphItem</span><b> where </b>(linkId = '809808816195')<b> then</b><span style=\"color: navy\"> {\r\n</span>        lymphItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">lymphItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createlymphobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractlymph&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Eosinophiles (linkId 6451887990893)</span>\r\n      hemoGroup.item<b> as </b><span style=\"color: maroon\">eosiItem</span><b> where </b>(linkId = '6451887990893')<b> then</b><span style=\"color: navy\"> {\r\n</span>        eosiItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">eosiItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createeosiobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extracteosi&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Monocytes (linkId 7935935816936)</span>\r\n      hemoGroup.item<b> as </b><span style=\"color: maroon\">monoItem</span><b> where </b>(linkId = '7935935816936')<b> then</b><span style=\"color: navy\"> {\r\n</span>        monoItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">monoItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createmonoobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractmono&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">TP (linkId 2055949655770)</span>\r\n      hemoGroup.item<b> as </b><span style=\"color: maroon\">tpItem</span><b> where </b>(linkId = '2055949655770')<b> then</b><span style=\"color: navy\"> {\r\n</span>        tpItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">tpItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createtpobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extracttp&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">TCA (linkId 2527095476817)</span>\r\n      hemoGroup.item<b> as </b><span style=\"color: maroon\">tcaItem</span><b> where </b>(linkId = '2527095476817')<b> then</b><span style=\"color: navy\"> {\r\n</span>        tcaItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">tcaItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createtcaobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extracttca&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;processhemo&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">// </span><span style=\"color: green\">Bilan hépatique (linkId 3893612773040)</span>\r\n    bioGroup.item<b> as </b><span style=\"color: maroon\">liverGroup</span><b> where </b>(linkId = '3893612773040')<b> then</b><span style=\"color: navy\"> {\r\n</span>      <span style=\"color: navy\">// </span><span style=\"color: green\">ASAT (linkId 3028330976100)</span>\r\n      liverGroup.item<b> as </b><span style=\"color: maroon\">asatItem</span><b> where </b>(linkId = '3028330976100')<b> then</b><span style=\"color: navy\"> {\r\n</span>        asatItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">asatItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createasatobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractasat&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">ALAT (linkId 8486813893880)</span>\r\n      liverGroup.item<b> as </b><span style=\"color: maroon\">alatItem</span><b> where </b>(linkId = '8486813893880')<b> then</b><span style=\"color: navy\"> {\r\n</span>        alatItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">alatItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createalatobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractalat&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">GGT (linkId 3663296044037)</span>\r\n      liverGroup.item<b> as </b><span style=\"color: maroon\">ggtItem</span><b> where </b>(linkId = '3663296044037')<b> then</b><span style=\"color: navy\"> {\r\n</span>        ggtItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">ggtItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createggtobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractggt&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">PAL (linkId 2690026606933)</span>\r\n      liverGroup.item<b> as </b><span style=\"color: maroon\">palItem</span><b> where </b>(linkId = '2690026606933')<b> then</b><span style=\"color: navy\"> {\r\n</span>        palItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">palItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createpalobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractpal&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Bilirubine totale (linkId 9068831071023)</span>\r\n      liverGroup.item<b> as </b><span style=\"color: maroon\">bilTotItem</span><b> where </b>(linkId = '9068831071023')<b> then</b><span style=\"color: navy\"> {\r\n</span>        bilTotItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bilTotItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createbiltotobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractbiltot&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Bilirubine conjuguée (linkId 8893717988787)</span>\r\n      liverGroup.item<b> as </b><span style=\"color: maroon\">bilConjItem</span><b> where </b>(linkId = '8893717988787')<b> then</b><span style=\"color: navy\"> {\r\n</span>        bilConjItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bilConjItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createbilconjobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractbilconj&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;processliver&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">// </span><span style=\"color: green\">Métabolisme glucidique (linkId 8929068894076)</span>\r\n    bioGroup.item<b> as </b><span style=\"color: maroon\">glucoseGroup</span><b> where </b>(linkId = '8929068894076')<b> then</b><span style=\"color: navy\"> {\r\n</span>      <span style=\"color: navy\">// </span><span style=\"color: green\">Glycémie à jeun (linkId 8193929027997)</span>\r\n      glucoseGroup.item<b> as </b><span style=\"color: maroon\">glycItem</span><b> where </b>(linkId = '8193929027997')<b> then</b><span style=\"color: navy\"> {\r\n</span>        glycItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">glycItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createglycobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractglyc&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">HbA1c (linkId 7063892830923)</span>\r\n      glucoseGroup.item<b> as </b><span style=\"color: maroon\">hba1cItem</span><b> where </b>(linkId = '7063892830923')<b> then</b><span style=\"color: navy\"> {\r\n</span>        hba1cItem.answer<b> as </b><span style=\"color: maroon\">ans</span><span style=\"color: navy\"><b> -&gt; </b></span>bundle<b> then </b>CreateLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">ans</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">hba1cItem</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">bundle</span><span style=\"color: navy\">)</span> <i>&quot;createhba1cobs&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extracthba1c&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;processglucose&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;processbiology&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Helper: Create a single Laboratory Observation</span>\r\n<b>group </b>CreateLabObservation<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">ans</span>, <b>source</b> <span style=\"color: maroon\">parentItem</span>, <b>target</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\"> : </span>Patient, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  ans<span style=\"color: navy\"><b> -&gt; </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">obsEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    ans<span style=\"color: navy\"><b> -&gt; </b></span>obsEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">obs</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;obsid&quot;</i><span style=\"color: navy\">;</span>\r\n      ans<span style=\"color: navy\"><b> -&gt; </b></span> obs.id<b> as </b><span style=\"color: maroon\">obsId</span><span style=\"color: navy\">, </span> obsEntry.fullUrl = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'urn:uuid:'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">obsId</span><span style=\"color: navy\">)</span> <i>&quot;setfullUrl&quot;</i><span style=\"color: navy\">;</span>\r\n      ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.meta = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Meta'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">meta</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        ans<span style=\"color: navy\"><b> -&gt; </b></span>meta.profile = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/dm-observation-laboratory-generic'</span> <i>&quot;obsprofile&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;obsmeta&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Status</span>\r\n      ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.status = <span style=\"color: blue\">'final'</span> <i>&quot;obsstatus&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Category</span>\r\n      ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.category = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">cat</span><b> then</b><span style=\"color: navy\"> {\r\n</span>        ans<span style=\"color: navy\"><b> -&gt; </b></span>cat.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          ans<span style=\"color: navy\"><b> -&gt; </b></span>coding.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/observation-category'</span> <i>&quot;catsystem&quot;</i><span style=\"color: navy\">;</span>\r\n          ans<span style=\"color: navy\"><b> -&gt; </b></span>coding.code = <span style=\"color: blue\">'laboratory'</span> <i>&quot;catcode&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;setcategorycoding&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;setcategory&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Link to patient</span>\r\n      ans<span style=\"color: navy\"><b> -&gt; </b></span> obs.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><span style=\"color: navy\">, </span> patient.id<b> as </b><span style=\"color: maroon\">patId</span><span style=\"color: navy\">, </span> ref.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patId</span><span style=\"color: navy\">)</span> <i>&quot;setsubject&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Value as Quantity</span>\r\n      ans<span style=\"color: navy\"><b> -&gt; </b></span>obs.value = <span style=\"color: navy\">(</span>ans.valueQuantity<span style=\"color: navy\">)</span> <i>&quot;setvalue&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">// </span><span style=\"color: green\">Extract nested items - LOINC code, effective date, status, reference ranges</span>\r\n      parentItem.item<b> as </b><span style=\"color: maroon\">loincItem</span><b> where </b>(linkId.contains('code loinc'))<b> then</b><span style=\"color: navy\"> {\r\n</span>        loincItem.answer<b> as </b><span style=\"color: maroon\">loincAns</span><span style=\"color: navy\"><b> -&gt; </b></span>obs.code = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">code</span><b> then</b><span style=\"color: navy\"> {\r\n</span>          loincAns<span style=\"color: navy\"><b> -&gt; </b></span>code.coding = <span style=\"color: navy\">(</span>loincAns.valueCoding<span style=\"color: navy\">)</span> <i>&quot;setloinccoding&quot;</i><span style=\"color: navy\">;</span>\r\n        <span style=\"color: navy\">}</span> <i>&quot;setcode&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extractloinc&quot;</i><span style=\"color: navy\">;</span>\r\n      parentItem.item<b> as </b><span style=\"color: maroon\">dateItem</span><b> where </b>(linkId.contains('Date et heure du prélèvement'))<b> then</b><span style=\"color: navy\"> {\r\n</span>        dateItem.answer<b> as </b><span style=\"color: maroon\">dateAns</span><span style=\"color: navy\"><b> -&gt; </b></span>obs.effective = <span style=\"color: navy\">(</span>dateAns.valueDateTime<span style=\"color: navy\">)</span> <i>&quot;seteffective&quot;</i><span style=\"color: navy\">;</span>\r\n      <span style=\"color: navy\">}</span> <i>&quot;extracteffective&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;createobs&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;obsentry&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
  },
  "url" : "https://interop.aphp.fr/ig/fhir/dm/StructureMap/Q2FSL",
  "version" : "0.1.0",
  "name" : "Q2FSL",
  "title" : "Transforms QuestionnaireResponse based on Questionnaire Usage Variables socles into FHIR resources conforming to DM profiles",
  "status" : "draft",
  "date" : "2025-10-23T20:49:03+00:00",
  "publisher" : "AP-HP",
  "contact" : [
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      "telecom" : [
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          "value" : "https://aphp.fr"
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  "jurisdiction" : [
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          "code" : "FR",
          "display" : "France"
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      "url" : "http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse",
      "mode" : "source",
      "alias" : "QuestionnaireResponse"
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      "url" : "http://hl7.org/fhir/StructureDefinition/Bundle",
      "mode" : "target",
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                      "element" : "fullUrl",
                      "transform" : "append",
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                  "source" : [
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                      "variable" : [
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                        "patient",
                        "bundle"
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                  "name" : "createmedicationadministrations",
                  "source" : [
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                      "variable" : [
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                        "patient",
                        "bundle"
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                  "name" : "createvitalsigns",
                  "source" : [
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                  "dependent" : [
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                      "variable" : [
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                        "patient",
                        "bundle"
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      "documentation" : "Group: Create Patient from QuestionnaireResponse",
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          "mode" : "target"
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          "source" : [
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              "transform" : "uuid"
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          "source" : [
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              "contextType" : "variable",
              "element" : "meta",
              "variable" : "meta",
              "transform" : "create",
              "parameter" : [
                {
                  "valueString" : "Meta"
                }
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          "rule" : [
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              "name" : "patientprofile",
              "source" : [
                {
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              "target" : [
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                  "contextType" : "variable",
                  "element" : "profile",
                  "transform" : "copy",
                  "parameter" : [
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                      "valueString" : "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DMPatient"
                    }
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        },
        {
          "name" : "processsociodemographics",
          "source" : [
            {
              "context" : "src",
              "element" : "item",
              "variable" : "socioDemo",
              "condition" : "(linkId = '4647259356106')"
            }
          ],
          "rule" : [
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              "name" : "processidentity",
              "source" : [
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                  "context" : "socioDemo",
                  "element" : "item",
                  "variable" : "identity",
                  "condition" : "(linkId = '2958000860428')"
                }
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              "rule" : [
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                  "source" : [
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                      "contextType" : "variable",
                      "element" : "name",
                      "variable" : "name",
                      "transform" : "create",
                      "parameter" : [
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                          "valueString" : "HumanName"
                        }
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                  "rule" : [
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                      "name" : "extractfamily",
                      "source" : [
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                          "context" : "identity",
                          "element" : "item",
                          "variable" : "familyItem",
                          "condition" : "(linkId = '8605698058770')"
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                      "rule" : [
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                              "contextType" : "variable",
                              "element" : "family",
                              "transform" : "evaluate",
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