Data Management with FHIR
0.1.0 - ci-build
Data Management with FHIR
0.1.0 - ci-build
Data Management with FHIR - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
| Draft as of 2025-10-23 |
{
"resourceType" : "StructureMap",
"id" : "EHR2FSL",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Narratif généré : StructureMap EHR2FSL</b></p><a name=\"EHR2FSL\"> </a><a name=\"hcEHR2FSL\"> </a><pre class=\"fml\">\r\n<b>map</b><span style=\"color: navy\"> "</span>https://interop.aphp.fr/ig/fhir/dm/StructureMap/EHR2FSL<span style=\"color: navy\">" = "</span>EHR2FSL<span style=\"color: navy\">"\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Transforms EHR logical model data to FHIR Semantic Layer resources using Bundle as container</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"StructureDefinition-ehr.html\" title=\"Electronic Health Record Data Model\">https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/ehr</a><span style=\"color: navy\">" </span><b>alias </b>EHR <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"http://hl7.org/fhir/R4/bundle.html\" title=\"Bundle\">http://hl7.org/fhir/StructureDefinition/Bundle</a><span style=\"color: navy\">" </span><b>alias </b>Bundle <b>as </b><b>target</b>\r\n\r\n<b>group </b>EHR2FSL<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>EHR, <b>target</b> <span style=\"color: maroon\">bundle</span><span style=\"color: navy\"> : </span>Bundle<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> <span style=\"color: navy\">// </span><span style=\"color: green\">Initialize Bundle</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>bundle.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>"bundleid"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>bundle.type = <span style=\"color: blue\">'collection'</span> <i>"bundletype"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span><span style=\"color: navy\">(</span>now()<span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">timestamp</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>bundle.timestamp = <span style=\"color: maroon\">timestamp</span> <i>"affectTimestamp"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"setTimestamp"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Transform Patient</span>\r\n src.patient<b> as </b><span style=\"color: maroon\">patient</span><span style=\"color: navy\"><b> -> </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">patientEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span> patient<span style=\"color: navy\"><b> -> </b></span>patientEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Patient'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">dmPatient</span><b> then</b><span style=\"color: navy\"> {\r\n</span> patient<b> then </b>TransformPatient<span style=\"color: navy\">(</span><span style=\"color: maroon\">patient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmPatient</span><span style=\"color: navy\">)</span> <i>"transformpatient"</i><span style=\"color: navy\">;</span>\r\n patient<b> then </b>setEntryRequestAndFullUrl<span style=\"color: navy\">(</span><span style=\"color: maroon\">dmPatient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">patientEntry</span><span style=\"color: navy\">)</span> <i>"setRequestAndFullUrl"</i><span style=\"color: navy\">;</span>\r\n src.patientAdresse<b> as </b><span style=\"color: maroon\">patientAdresse</span><b> where </b>patientAdresse.patientId = %patient.patientId<b> then </b>setAddress<span style=\"color: navy\">(</span><span style=\"color: maroon\">patientAdresse</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmPatient</span><span style=\"color: navy\">)</span> <i>"transformpatientAdresse"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Transform PMSI Encounters</span>\r\n src.donneesPmsi<b> as </b><span style=\"color: maroon\">pmsi</span><b> where </b>pmsi.patientId = %patient.patientId<span style=\"color: navy\"><b> -> </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">encounterEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span> pmsi<span style=\"color: navy\"><b> -> </b></span>encounterEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Encounter'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">dmEncounter</span><b> then</b><span style=\"color: navy\"> {\r\n</span> pmsi<b> then </b>TransformEncounter<span style=\"color: navy\">(</span><span style=\"color: maroon\">pmsi</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmEncounter</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmPatient</span><span style=\"color: navy\">)</span> <i>"transformencounter"</i><span style=\"color: navy\">;</span>\r\n pmsi<b> then </b>setEntryRequestAndFullUrl<span style=\"color: navy\">(</span><span style=\"color: maroon\">dmEncounter</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">encounterEntry</span><span style=\"color: navy\">)</span> <i>"setRequestAndFullUrl"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Transform Conditions (Diagnostics)</span>\r\n src.diagnostics<b> as </b><span style=\"color: maroon\">diag</span><b> where </b>(diag.patientId = %patient.patientId) and (diag.pmsiId = %pmsi.pmsiId)<span style=\"color: navy\"><b> -> </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">conditionEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span> diag<span style=\"color: navy\"><b> -> </b></span>conditionEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Condition'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">dmCondition</span><b> then</b><span style=\"color: navy\"> {\r\n</span> diag<b> then </b>TransformCondition<span style=\"color: navy\">(</span><span style=\"color: maroon\">diag</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmCondition</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmPatient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmEncounter</span><span style=\"color: navy\">)</span> <i>"transformcondition"</i><span style=\"color: navy\">;</span>\r\n diag<b> then </b>setEntryRequestAndFullUrl<span style=\"color: navy\">(</span><span style=\"color: maroon\">dmCondition</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">conditionEntry</span><span style=\"color: navy\">)</span> <i>"setRequestAndFullUrl"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createcondition"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"conditionentries"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Transform Procedures (Actes)</span>\r\n src.actes<b> as </b><span style=\"color: maroon\">acte</span><b> where </b>(acte.patientId = %patient.patientId) and (acte.pmsiId = %pmsi.pmsiId)<span style=\"color: navy\"><b> -> </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">procedureEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span> acte<span style=\"color: navy\"><b> -> </b></span>procedureEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Procedure'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">dmProcedure</span><b> then</b><span style=\"color: navy\"> {\r\n</span> acte<b> then </b>TransformProcedure<span style=\"color: navy\">(</span><span style=\"color: maroon\">acte</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmProcedure</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmPatient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmEncounter</span><span style=\"color: navy\">)</span> <i>"transformprocedure"</i><span style=\"color: navy\">;</span>\r\n acte<b> then </b>setEntryRequestAndFullUrl<span style=\"color: navy\">(</span><span style=\"color: maroon\">dmProcedure</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">procedureEntry</span><span style=\"color: navy\">)</span> <i>"setRequestAndFullUrl"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createprocedure"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"procedureentries"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createencounter"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"encounterentries"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Transform Laboratory Observations</span>\r\n src.biologie<b> as </b><span style=\"color: maroon\">lab</span><b> where </b>lab.patientId = %patient.patientId<span style=\"color: navy\"><b> -> </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">labEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span> lab<span style=\"color: navy\"><b> -> </b></span>labEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">dmLab</span><b> then</b><span style=\"color: navy\"> {\r\n</span> lab<b> then </b>TransformLabObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">lab</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmLab</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmPatient</span><span style=\"color: navy\">)</span> <i>"transformLabObs"</i><span style=\"color: navy\">;</span>\r\n lab<b> then </b>setEntryRequestAndFullUrl<span style=\"color: navy\">(</span><span style=\"color: maroon\">dmLab</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">labEntry</span><span style=\"color: navy\">)</span> <i>"setRequestAndFullUrl"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createlabobs"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"labentries"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Transform Medication Requests</span>\r\n src.prescription<b> as </b><span style=\"color: maroon\">pres</span><b> where </b>pres.patientId = %patient.patientId<span style=\"color: navy\"><b> -> </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">medReqEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span> pres<span style=\"color: navy\"><b> -> </b></span>medReqEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'MedicationRequest'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">dmMedReq</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<b> then </b>TransformMedicationRequest<span style=\"color: navy\">(</span><span style=\"color: maroon\">pres</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmMedReq</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmPatient</span><span style=\"color: navy\">)</span> <i>"createmedrequest"</i><span style=\"color: navy\">;</span>\r\n pres<b> then </b>setEntryRequestAndFullUrl<span style=\"color: navy\">(</span><span style=\"color: maroon\">dmMedReq</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">medReqEntry</span><span style=\"color: navy\">)</span> <i>"setRequestAndFullUrl"</i><span style=\"color: navy\">;</span>\r\n src.posologie<b> as </b><span style=\"color: maroon\">poso</span><b> where </b>%poso.prescriptionId = %pres.prescriptionId<b> then </b>setPoso<span style=\"color: navy\">(</span><span style=\"color: maroon\">poso</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">pres</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmMedReq</span><span style=\"color: navy\">)</span> <i>"transformPoso"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Transform Administration (W prescription)</span>\r\n src.administration<b> as </b><span style=\"color: maroon\">admin</span><b> where </b>(admin.patientId = %patient.patientId) and (admin.prescriptionId = pres.prescriptionId)<span style=\"color: navy\"><b> -> </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">adminEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span> admin<span style=\"color: navy\"><b> -> </b></span>adminEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'MedicationAdministration'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">dmAdmin</span><b> then</b><span style=\"color: navy\"> {\r\n</span> admin<b> then </b>TransformMedicationAdministrationWOrder<span style=\"color: navy\">(</span><span style=\"color: maroon\">admin</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmAdmin</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmPatient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmMedReq</span><span style=\"color: navy\">)</span> <i>"createmedadmin"</i><span style=\"color: navy\">;</span>\r\n admin<b> then </b>setEntryRequestAndFullUrl<span style=\"color: navy\">(</span><span style=\"color: maroon\">dmAdmin</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">adminEntry</span><span style=\"color: navy\">)</span> <i>"setRequestAndFullUrl"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createmedadmin"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"administrationentries"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createmedreq"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"medicationentries"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Transform Lifestyle Observations - separate observation for each lifestyle element</span>\r\n src.styleVie<b> as </b><span style=\"color: maroon\">lifestyle</span><b> where </b>lifestyle.patientId = %patient.patientId<b> then</b><span style=\"color: navy\"> {\r\n</span> <span style=\"color: navy\">// </span><span style=\"color: green\">Tobacco consumption observation</span>\r\n lifestyle.consommationTabac<b> as </b><span style=\"color: maroon\">tobacco</span><b> where </b>tobacco.exists()<span style=\"color: navy\"><b> -> </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">tobaccoEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span> tobacco<span style=\"color: navy\"><b> -> </b></span>tobaccoEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tobaccoObs</span><b> then</b><span style=\"color: navy\"> {\r\n</span> lifestyle<b> then </b>TransformTobaccoObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">lifestyle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">tobaccoObs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmPatient</span><span style=\"color: navy\">)</span> <i>"createtobaccoobs"</i><span style=\"color: navy\">;</span>\r\n lifestyle<b> then </b>setEntryRequestAndFullUrl<span style=\"color: navy\">(</span><span style=\"color: maroon\">tobaccoObs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">tobaccoEntry</span><span style=\"color: navy\">)</span> <i>"setRequestAndFullUrl"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createtobaccoobs"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"tobaccoentries"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Alcohol consumption observation</span>\r\n lifestyle.consommationAlcool<b> as </b><span style=\"color: maroon\">alcohol</span><b> where </b>alcohol.exists()<span style=\"color: navy\"><b> -> </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">alcoholEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span> alcohol<span style=\"color: navy\"><b> -> </b></span>alcoholEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">alcoholObs</span><b> then</b><span style=\"color: navy\"> {\r\n</span> lifestyle<b> then </b>TransformAlcoholObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">lifestyle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">alcoholObs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmPatient</span><span style=\"color: navy\">)</span> <i>"createalcoholobs"</i><span style=\"color: navy\">;</span>\r\n lifestyle<b> then </b>setEntryRequestAndFullUrl<span style=\"color: navy\">(</span><span style=\"color: maroon\">alcoholObs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">alcoholEntry</span><span style=\"color: navy\">)</span> <i>"setRequestAndFullUrl"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createalcoholobs"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"alcoholentries"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Drug consumption observation</span>\r\n lifestyle.consommationAutresDrogues<b> as </b><span style=\"color: maroon\">drugs</span><b> where </b>drugs.exists()<span style=\"color: navy\"><b> -> </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">drugEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span> drugs<span style=\"color: navy\"><b> -> </b></span>drugEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">drugObs</span><b> then</b><span style=\"color: navy\"> {\r\n</span> lifestyle<b> then </b>TransformDrugObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">lifestyle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">drugObs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmPatient</span><span style=\"color: navy\">)</span> <i>"createdrugobs"</i><span style=\"color: navy\">;</span>\r\n lifestyle<b> then </b>setEntryRequestAndFullUrl<span style=\"color: navy\">(</span><span style=\"color: maroon\">drugObs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">drugEntry</span><span style=\"color: navy\">)</span> <i>"setRequestAndFullUrl"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createdrugobs"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"drugentries"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Physical activity observation</span>\r\n lifestyle.activitePhysique<b> as </b><span style=\"color: maroon\">physical</span><b> where </b>physical.exists()<span style=\"color: navy\"><b> -> </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">physicalEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span> physical<span style=\"color: navy\"><b> -> </b></span>physicalEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">physicalObs</span><b> then</b><span style=\"color: navy\"> {\r\n</span> lifestyle<b> then </b>TransformPhysicalActivityObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">lifestyle</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">physicalObs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmPatient</span><span style=\"color: navy\">)</span> <i>"createphysicalobs"</i><span style=\"color: navy\">;</span>\r\n lifestyle<b> then </b>setEntryRequestAndFullUrl<span style=\"color: navy\">(</span><span style=\"color: maroon\">physicalObs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">physicalEntry</span><span style=\"color: navy\">)</span> <i>"setRequestAndFullUrl"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createphysicalobs"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"physicalentries"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"lifestyleentries"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Transform Care Observations (s)</span>\r\n src.dossierSoins<b> as </b><span style=\"color: maroon\">soin</span><b> where </b>soin.patientId = %patient.patientId<span style=\"color: navy\"><b> -> </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">vitalEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span> soin<span style=\"color: navy\"><b> -> </b></span>vitalEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Observation'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">dmObs</span><b> then</b><span style=\"color: navy\"> {\r\n</span> soin<b> then </b>TransformVitalSigns<span style=\"color: navy\">(</span><span style=\"color: maroon\">soin</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmObs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmPatient</span><span style=\"color: navy\">)</span> <i>"createmesureobs"</i><span style=\"color: navy\">;</span>\r\n soin<b> then </b>setEntryRequestAndFullUrl<span style=\"color: navy\">(</span><span style=\"color: maroon\">dmObs</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">vitalEntry</span><span style=\"color: navy\">)</span> <i>"setRequestAndFullUrl"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createmesureobs"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"vitalentries"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Transform Administration (WO prescription)</span>\r\n src.administration<b> as </b><span style=\"color: maroon\">admin</span><b> where </b>(admin.patientId = %patient.patientId) and admin.prescriptionId.empty()<span style=\"color: navy\"><b> -> </b></span>bundle.entry<b> as </b><span style=\"color: maroon\">adminEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span> admin<span style=\"color: navy\"><b> -> </b></span>adminEntry.resource = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'MedicationAdministration'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">dmAdmin</span><b> then</b><span style=\"color: navy\"> {\r\n</span> admin<b> then </b>TransformMedicationAdministrationWOOrder<span style=\"color: navy\">(</span><span style=\"color: maroon\">admin</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmAdmin</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">dmPatient</span><span style=\"color: navy\">)</span> <i>"createmedadmin"</i><span style=\"color: navy\">;</span>\r\n admin<b> then </b>setEntryRequestAndFullUrl<span style=\"color: navy\">(</span><span style=\"color: maroon\">dmAdmin</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">adminEntry</span><span style=\"color: navy\">)</span> <i>"setRequestAndFullUrl"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createmedadmin"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"administrationentries"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createpatient"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"patiententry"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">---------------------------------------------------------</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">PATIENT TRANSFORMATION</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">---------------------------------------------------------</span>\r\n<b>group </b>TransformPatient<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>Patient<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>tgt.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>"setId"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: #b36b00\" title=\"Cet élément nétait pas défini avant R5\">// src.patientId as id -> tgt.id = id "patient-id";</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Identifiers</span>\r\n src.patientId<b> as </b><span style=\"color: maroon\">pid</span><span style=\"color: navy\"><b> -> </b></span>tgt.identifier<b> as </b><span style=\"color: maroon\">identifier</span><b> then</b><span style=\"color: navy\"> {\r\n</span> pid<span style=\"color: navy\"><b> -> </b></span>identifier.use = <span style=\"color: blue\">'usual'</span> <i>"iduse"</i><span style=\"color: navy\">;</span>\r\n pid<span style=\"color: navy\"><b> -> </b></span>identifier.type = <b>cc</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/v2-0203'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'PI'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'Patient Identifier'</span><span style=\"color: navy\">)</span> <i>"idtype"</i><span style=\"color: navy\">;</span>\r\n pid<span style=\"color: navy\"><b> -> </b></span>identifier.system = <span style=\"color: blue\">'https://hospital.eu/ehr/patient-id'</span> <i>"idsystem"</i><span style=\"color: navy\">;</span>\r\n pid<span style=\"color: navy\"><b> -> </b></span>identifier.value = <span style=\"color: maroon\">pid</span> <i>"idvalue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"patientidentifier"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">NIR identifier <- C'est pas terrible côté expression de besoin : qu'est ce qu'ils veulent quand ils disent NIR ? ça peut être le NSS, mais du coup c'est pas un identifier (un NSS peut correspondre à plusieurs ayant droits), et ce serait plutôt une info qui irait côté claim. ça peut aussi être l'ins-nir, mais du coup qu'est ce qu'ils attendent dans l'ins ? Bref, à mon avis, faut discuter cette variable au niveau du GT.</span>\r\n <span style=\"color: #b36b00\" title=\"Cet élément nétait pas défini avant R5\">// src.nir as nir where nir.exists() -> tgt.identifier as insIdentifier then { nir -> insIdentifier.use = 'official' "ins-use"; nir -> insIdentifier.type = cc('http://hl7.fr/fhir/CodeSystem/fr-v2-0203', 'INS-NIR') "ins-type"; nir -> insIdentifier.system = 'urn:oid:1.2.250.1.213.1.4.8' "ins-system"; nir -> insIdentifier.value = nir "ins-value"; } "ins-identifier";</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Alternative INS from ins field</span>\r\n src.ins<b> as </b><span style=\"color: maroon\">ins</span><b> where </b>ins.exists()<span style=\"color: navy\"><b> -> </b></span>tgt.identifier<b> as </b><span style=\"color: maroon\">insIdentifier</span><b> then</b><span style=\"color: navy\"> {\r\n</span> ins<span style=\"color: navy\"><b> -> </b></span>insIdentifier.use = <span style=\"color: blue\">'official'</span> <i>"insuse"</i><span style=\"color: navy\">;</span> <span style=\"color: navy\">// </span><span style=\"color: green\">On part du principe qu'on n'est pas sur un old.</span>\r\n ins<span style=\"color: navy\"><b> -> </b></span>insIdentifier.type = <b>cc</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'https://hl7.fr/ig/fhir/core/CodeSystem/fr-core-cs-v2-0203'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'INS-NIR'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'NIR définitif'</span><span style=\"color: navy\">)</span> <i>"instype"</i><span style=\"color: navy\">;</span>\r\n ins<span style=\"color: navy\"><b> -> </b></span>insIdentifier.system = <span style=\"color: blue\">'urn:oid:1.2.250.1.213.1.4.8'</span> <i>"inssystem"</i><span style=\"color: navy\">;</span>\r\n ins<span style=\"color: navy\"><b> -> </b></span>insIdentifier.value = <span style=\"color: maroon\">ins</span> <i>"insvalue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"insidentifier"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Name</span>\r\n src<b> where </b>src.nom.exists() or src.prenom.exists()<span style=\"color: navy\"><b> -> </b></span>tgt.name<b> as </b><span style=\"color: maroon\">name</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src.nom<b> as </b><span style=\"color: maroon\">lastName</span><span style=\"color: navy\"><b> -> </b></span>name.family = <span style=\"color: maroon\">lastName</span> <i>"familyname"</i><span style=\"color: navy\">;</span>\r\n src.prenom<b> as </b><span style=\"color: maroon\">firstName</span><span style=\"color: navy\"><b> -> </b></span>name.given = <span style=\"color: maroon\">firstName</span> <i>"givenname"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>name.use = <span style=\"color: blue\">'official'</span> <i>"nameuse"</i><span style=\"color: navy\">;</span> <span style=\"color: navy\">// </span><span style=\"color: green\">hypothèse un peu forte.</span>\r\n <span style=\"color: navy\">}</span> <i>"patientname"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Demographics On aurait pu faire plus élégant avec un ConceptMap</span>\r\n src.dateNaissance<b> as </b><span style=\"color: maroon\">birthDate</span><span style=\"color: navy\"><b> -> </b></span>tgt.birthDate = <span style=\"color: maroon\">birthDate</span> <i>"birthdate"</i><span style=\"color: navy\">;</span>\r\n src.sexe<b> as </b><span style=\"color: maroon\">gender</span><b> where </b>gender = 'h'<span style=\"color: navy\"><b> -> </b></span>tgt.gender = <span style=\"color: blue\">'male'</span> <i>"gendermale"</i><span style=\"color: navy\">;</span>\r\n src.sexe<b> as </b><span style=\"color: maroon\">gender</span><b> where </b>gender = 'f'<span style=\"color: navy\"><b> -> </b></span>tgt.gender = <span style=\"color: blue\">'female'</span> <i>"genderfemale"</i><span style=\"color: navy\">;</span>\r\n src.sexe<b> as </b><span style=\"color: maroon\">gender</span><b> where </b>gender.exists() and (gender != 'h') and (gender != 'f')<span style=\"color: navy\"><b> -> </b></span>tgt.gender = <span style=\"color: blue\">'unknown'</span> <i>"genderunknown"</i><span style=\"color: navy\">;</span> <span style=\"color: navy\">// </span><span style=\"color: green\">n'a pas grand sens en l'état des contraintes SQL</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Death information</span>\r\n src.dateDeces<b> as </b><span style=\"color: maroon\">deathDate</span><b> where </b>deathDate.exists()<span style=\"color: navy\"><b> -> </b></span>tgt.deceased = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">deathDate</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'dateTime'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">deceasedDate</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src.sourceDeces<b> as </b><span style=\"color: maroon\">deathSource</span><b> where </b>deathSource.exists()<span style=\"color: navy\"><b> -> </b></span>deceasedDate.extension<b> as </b><span style=\"color: maroon\">DeathSourceExtension</span><b> then</b><span style=\"color: navy\"> {\r\n</span> deathSource<span style=\"color: navy\"><b> -> </b></span>DeathSourceExtension.url = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/DeathSource'</span> <i>"deathSourceUrl"</i><span style=\"color: navy\">;</span>\r\n deathSource<span style=\"color: navy\"><b> -> </b></span>DeathSourceExtension.value = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">deathSource</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span> <i>"deathSourceValue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"deathSource"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"deathDate"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Multiple birth</span>\r\n src.rangGemellaire<b> as </b><span style=\"color: maroon\">twin</span><b> where </b>twin.exists()<span style=\"color: navy\"><b> -> </b></span>tgt.multipleBirth = <span style=\"color: maroon\">twin</span> <i>"multiplebirth"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">PATIENT_LOCATION TRANSFORMATION</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<b>group </b>setAddress<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgtPat</span><span style=\"color: navy\"> : </span>Patient<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src<b> where </b>src.latitude.exists() or src.longitude.exists() or src.codeIris.exists() or src.libelleIris.exists() or src.codeGeographiqueResidence.exists()<b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>tgtPat.address<b> as </b><span style=\"color: maroon\">newAddress</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<b> where </b>src.latitude.exists() or src.longitude.exists()<span style=\"color: navy\"><b> -> </b></span> newAddress.extension<b> as </b><span style=\"color: maroon\">geolocationExtension</span><span style=\"color: navy\">, </span> geolocationExtension.url = <span style=\"color: blue\">'http://hl7.org/fhir/StructureDefinition/geolocation'</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src.latitude<b> as </b><span style=\"color: maroon\">srcLat</span><span style=\"color: navy\"><b> -> </b></span> geolocationExtension.extension<b> as </b><span style=\"color: maroon\">tgtLat</span><span style=\"color: navy\">, </span> tgtLat.url = <span style=\"color: blue\">'latitude'</span><span style=\"color: navy\">, </span> tgtLat.value = <span style=\"color: maroon\">srcLat</span> <i>"setLat"</i><span style=\"color: navy\">;</span>\r\n src.longitude<b> as </b><span style=\"color: maroon\">srcLong</span><span style=\"color: navy\"><b> -> </b></span> geolocationExtension.extension<b> as </b><span style=\"color: maroon\">tgtLong</span><span style=\"color: navy\">, </span> tgtLong.url = <span style=\"color: blue\">'longitude'</span><span style=\"color: navy\">, </span> tgtLong.value = <span style=\"color: maroon\">srcLong</span> <i>"setLong"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"setCoordinates"</i><span style=\"color: navy\">;</span>\r\n src<b> where </b>src.codeIris.exists() or src.libelleIris.exists()<span style=\"color: navy\"><b> -> </b></span> newAddress.line = <span style=\"color: navy\">(</span>%src.libelleIris<span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">irisLine</span><span style=\"color: navy\">, </span> irisLine.extension = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Extension'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">irisExtension</span><span style=\"color: navy\">, </span> irisExtension.url = <span style=\"color: blue\">'http://hl7.org/fhir/StructureDefinition/iso21090-ADXP-censusTract'</span><span style=\"color: navy\">, </span> irisExtension.value = <span style=\"color: navy\">(</span>%src.codeIris<span style=\"color: navy\">)</span> <i>"setIris"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">src where src.codeIris.exists() or src.libelleIris.exists() -> newAddress.extension as irisExtension,</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">irisExtension.url = 'http://hl7.org/fhir/StructureDefinition/iso21090-ADXP-censusTract',</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">irisExtension.value = (iif(%src.codeIris.exists() and %src.libelleIris.exists(), %src.codeIris & ' - ' & %src.libelleIris, %src.codeIris & %src.libelleIris)) "setIris";</span>\r\n src.codeGeographiqueResidence<b> as </b><span style=\"color: maroon\">srcCodeGeographiqueResidence</span><b> where </b>src.codeGeographiqueResidence.exists()<span style=\"color: navy\"><b> -> </b></span> newAddress.extension<b> as </b><span style=\"color: maroon\">residencePmsiExtension</span><span style=\"color: navy\">, </span> residencePmsiExtension.url = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/PmsiCodeGeo'</span><span style=\"color: navy\">, </span> residencePmsiExtension.value = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">srcCodeGeographiqueResidence</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span> <i>"SetResidencePmsi"</i><span style=\"color: navy\">;</span>\r\n src.dateRecueil<b> as </b><span style=\"color: maroon\">dateRecueil</span><span style=\"color: navy\"><b> -> </b></span> newAddress.period<b> as </b><span style=\"color: maroon\">newAddressPeriod</span><span style=\"color: navy\">, </span> newAddressPeriod.start = <span style=\"color: maroon\">dateRecueil</span> <i>"setDateRecueil"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createAddress"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"checkSource"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">ENCOUNTER TRANSFORMATION</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<b>group </b>TransformEncounter<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgtEnc</span><span style=\"color: navy\"> : </span>Encounter, <b>source</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>tgtEnc.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>"setId"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: #b36b00\" title=\"Cet élément nétait pas défini avant R5\">// src.pmsiId as id -> tgt.id = id "encounter-id";</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Identifier</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtEnc.identifier<b> as </b><span style=\"color: maroon\">identifier</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>identifier.type = <b>cc</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'https://hl7.fr/ig/fhir/core/CodeSystem/fr-core-cs-identifier-type'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'VN'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'Visit Number'</span><span style=\"color: navy\">)</span> <i>"idtype"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>identifier.system = <span style=\"color: blue\">'https://hospital.eu/ehr/pmsi-id'</span> <i>"encounteridsystem"</i><span style=\"color: navy\">;</span>\r\n src.pmsiId<b> as </b><span style=\"color: maroon\">srcEncoutnerId</span><span style=\"color: navy\"><b> -> </b></span>identifier.value = <span style=\"color: maroon\">srcEncoutnerId</span> <i>"encounteridvalue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"encounteridentifier"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Status - default to finished for historical data</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtEnc.status = <span style=\"color: blue\">'finished'</span> <i>"encounterstatus"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Class - assume inpatient for PMSI data</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtEnc.class = <b>c</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/v3-ActCode'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'IMP'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'inpatient encounter'</span><span style=\"color: navy\">)</span> <i>"encounterclass"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Reference patient</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtEnc.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><b> then</b><span style=\"color: navy\"> {\r\n</span> patient.id<b> as </b><span style=\"color: maroon\">patientId</span><span style=\"color: navy\"><b> -> </b></span> ref.reference = <span style=\"color: navy\">(</span>'Patient/' + %patientId<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> ref.type = <span style=\"color: blue\">'Patient'</span> <i>"subjectreference"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"encountersubject"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Period</span>\r\n src<b> where </b>src.dateDebutSejour.exists() or src.dateFinSejour.exists()<span style=\"color: navy\"><b> -> </b></span>tgtEnc.period<b> as </b><span style=\"color: maroon\">period</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src.dateDebutSejour<b> as </b><span style=\"color: maroon\">startDate</span><span style=\"color: navy\"><b> -> </b></span>period.start = <span style=\"color: maroon\">startDate</span> <i>"periodstart"</i><span style=\"color: navy\">;</span>\r\n src.dateFinSejour<b> as </b><span style=\"color: maroon\">endDate</span><span style=\"color: navy\"><b> -> </b></span>period.end = <span style=\"color: maroon\">endDate</span> <i>"periodend"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"encounterperiod"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Désactivé dans le modèle physique // Duration src.dureeSejour as duration -> tgtEnc.length as length then { duration -> length.value = duration "length-value"; duration -> length.unit = 'd' "length-unit"; duration -> length.system = 'http://unitsofmeasure.org' "length-system"; duration -> length.code = 'd' "length-code"; } "encounter-length";</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Hospitalization</span>\r\n src<b> where </b>src.modeEntree.exists() or src.modeSortie.exists()<span style=\"color: navy\"><b> -> </b></span>tgtEnc.hospitalization<b> as </b><span style=\"color: maroon\">hosp</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src.modeEntree<b> as </b><span style=\"color: maroon\">admitSource</span><span style=\"color: navy\"><b> -> </b></span>hosp.admitSource<b> as </b><span style=\"color: maroon\">admitSrc</span><b> then</b><span style=\"color: navy\"> {\r\n</span> admitSource<span style=\"color: navy\"><b> -> </b></span>admitSrc.text = <span style=\"color: maroon\">admitSource</span> <i>"admitsourcetext"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"admitsource"</i><span style=\"color: navy\">;</span>\r\n src.modeSortie<b> as </b><span style=\"color: maroon\">dischargeDisp</span><span style=\"color: navy\"><b> -> </b></span>hosp.dischargeDisposition<b> as </b><span style=\"color: maroon\">dischargeDsp</span><b> then</b><span style=\"color: navy\"> {\r\n</span> dischargeDisp<span style=\"color: navy\"><b> -> </b></span>dischargeDsp.text = <span style=\"color: maroon\">dischargeDisp</span> <i>"dischargedisptext"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"dischargedisposition"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"encounterhospitalization"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Service Provider</span>\r\n src<b> where </b>src.uniteFonctionnelle.exists() or src.service.exists() or src.etablissement.exists()<span style=\"color: navy\"><b> -> </b></span>tgtEnc.serviceProvider<b> as </b><span style=\"color: maroon\">provider</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>provider.display = <span style=\"color: navy\">(</span>iif(%src.uniteFonctionnelle.exists(), %src.uniteFonctionnelle, iif(%src.service.exists(), %src.service, %src.etablissement))<span style=\"color: navy\">)</span> <i>"providerdisplay"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"provider"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">// Location - On n'a pas de location à gérer à ce stade (établissement, service et UF, halluciné par l'IA, sont des Organization que j'ai du coup mi dans Provider. ) src.service as service -> tgt.location as location then { service -> location.location as loc then { service -> loc.display = service "location-display"; } "location-ref"; } "encounter-location";</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">CONDITION TRANSFORMATION</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<b>group </b>TransformCondition<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgtCond</span><span style=\"color: navy\"> : </span>Condition, <b>source</b> <span style=\"color: maroon\">patient</span>, <b>source</b> <span style=\"color: maroon\">encounter</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>tgtCond.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>"setId"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Identifier</span>\r\n src.diagnosticId<b> as </b><span style=\"color: maroon\">diagId</span><span style=\"color: navy\"><b> -> </b></span>tgtCond.identifier<b> as </b><span style=\"color: maroon\">identifier</span><b> then</b><span style=\"color: navy\"> {\r\n</span> diagId<span style=\"color: navy\"><b> -> </b></span>identifier.system = <span style=\"color: blue\">'https://hospital.eu/ehr/diagnostic-id'</span> <i>"conditionidsystem"</i><span style=\"color: navy\">;</span>\r\n diagId<span style=\"color: navy\"><b> -> </b></span>identifier.value = <span style=\"color: maroon\">diagId</span> <i>"conditionidvalue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"conditionidentifier"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Category</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Représentation des codes diagnostics du PMSI dans condition , plusieurs options :</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">- ce sont des infos de claim, pas de condition</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">- utiliser la catégorie 'encounter-diagnosis'</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">- utiliser les catégories du PMSI : DP, DR, DAS, DAD</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">- mettre les deux précédent <- j'ai fait ça.</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtCond.category = <b>cc</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/condition-category'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'encounter-diagnosis'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'Encounter Diagnosis'</span><span style=\"color: navy\">)</span> <i>"categoryencounterDiag"</i><span style=\"color: navy\">;</span>\r\n src.typeDiagnostic<b> as </b><span style=\"color: maroon\">diagType</span><span style=\"color: navy\"><b> -> </b></span>tgtCond.category<b> as </b><span style=\"color: maroon\">category</span><b> then</b><span style=\"color: navy\"> {\r\n</span> diagType<span style=\"color: navy\"><b> -> </b></span>category.text = <span style=\"color: maroon\">diagType</span> <i>"categorytext"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"conditioncategory"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Code (ICD-10)</span>\r\n src.codeDiagnostic<b> as </b><span style=\"color: maroon\">srcCode</span><span style=\"color: navy\"><b> -> </b></span>tgtCond.code<b> as </b><span style=\"color: maroon\">conditionCode</span><b> then</b><span style=\"color: navy\"> {\r\n</span> <span style=\"color: navy\">// </span><span style=\"color: green\">la fonction cc ne peuple pas le display...</span>\r\n src.libelleDiagnostic<b> as </b><span style=\"color: maroon\">label</span><span style=\"color: navy\"><b> -> </b></span> conditionCode.coding<b> as </b><span style=\"color: maroon\">tgtCoding</span><span style=\"color: navy\">, </span> tgtCoding.system = <span style=\"color: blue\">'http://hl7.org/fhir/sid/icd-10'</span><span style=\"color: navy\">, </span> tgtCoding.code = <span style=\"color: maroon\">srcCode</span> <i>"conditioncode"</i><span style=\"color: navy\">;</span>\r\n src.libelleDiagnostic<b> as </b><span style=\"color: maroon\">text</span><span style=\"color: navy\"><b> -> </b></span>conditionCode.text = <span style=\"color: maroon\">text</span> <i>"codetext"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"varcode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Subject</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtCond.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><b> then</b><span style=\"color: navy\"> {\r\n</span> patient.id<b> as </b><span style=\"color: maroon\">patientId</span><span style=\"color: navy\"><b> -> </b></span> ref.reference = <span style=\"color: navy\">(</span>'Patient/' + %patientId<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> ref.type = <span style=\"color: blue\">'Patient'</span> <i>"subjectref"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"conditionsubject"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Encounter reference</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtCond.encounter = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><b> then</b><span style=\"color: navy\"> {\r\n</span> encounter.id<b> as </b><span style=\"color: maroon\">encounterId</span><span style=\"color: navy\"><b> -> </b></span> ref.reference = <span style=\"color: navy\">(</span>'Encounter/' + %encounterId<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> ref.type = <span style=\"color: blue\">'Encounter'</span> <i>"encounterref"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"conditionencounter"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Recorded date</span>\r\n src.dateRecueil<b> as </b><span style=\"color: maroon\">entryDate</span><span style=\"color: navy\"><b> -> </b></span>tgtCond.recordedDate = <span style=\"color: maroon\">entryDate</span> <i>"conditionrecordeddate"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Clinical status - assume active for recorded diagnoses</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtCond.clinicalStatus = <b>cc</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/condition-clinical'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'active'</span><span style=\"color: navy\">)</span> <i>"conditionclinicalstatus"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Verification status - assume confirmed for coded diagnoses</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtCond.verificationStatus = <b>cc</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/condition-ver-status'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'confirmed'</span><span style=\"color: navy\">)</span> <i>"conditionverificationstatus"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">PROCEDURE TRANSFORMATION</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<b>group </b>TransformProcedure<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgtProc</span><span style=\"color: navy\"> : </span>Procedure, <b>source</b> <span style=\"color: maroon\">patient</span>, <b>source</b> <span style=\"color: maroon\">encounter</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>tgtProc.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>"setId"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Identifier</span>\r\n src.acteId<b> as </b><span style=\"color: maroon\">acteId</span><span style=\"color: navy\"><b> -> </b></span>tgtProc.identifier<b> as </b><span style=\"color: maroon\">identifier</span><b> then</b><span style=\"color: navy\"> {\r\n</span> acteId<span style=\"color: navy\"><b> -> </b></span>identifier.system = <span style=\"color: blue\">'https://hospital.eu/ehr/acte-id'</span> <i>"procedureidsystem"</i><span style=\"color: navy\">;</span>\r\n acteId<span style=\"color: navy\"><b> -> </b></span>identifier.value = <span style=\"color: maroon\">acteId</span> <i>"procedureidvalue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"procedureidentifier"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Status - assume completed for historical data</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtProc.status = <span style=\"color: blue\">'completed'</span> <i>"procedurestatus"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Code (CCAM)</span>\r\n src.codeActe<b> as </b><span style=\"color: maroon\">code</span><span style=\"color: navy\"><b> -> </b></span>tgtProc.code<b> as </b><span style=\"color: maroon\">procedureCode</span><b> then</b><span style=\"color: navy\"> {\r\n</span> code<span style=\"color: navy\"><b> -> </b></span> procedureCode.coding<b> as </b><span style=\"color: maroon\">coding</span><span style=\"color: navy\">, </span> coding.system = <span style=\"color: blue\">'https://interop.aphp.fr/ig/fhir/dm/CodeSystem/Ccam'</span><span style=\"color: navy\">, </span> coding.code = <span style=\"color: maroon\">code</span> <i>"procedurecoding"</i><span style=\"color: navy\">;</span>\r\n src.libelleActe<b> as </b><span style=\"color: maroon\">text</span><span style=\"color: navy\"><b> -> </b></span>procedureCode.text = <span style=\"color: maroon\">text</span> <i>"codetext"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"procedurecode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Subject</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtProc.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><b> then</b><span style=\"color: navy\"> {\r\n</span> patient.id<b> as </b><span style=\"color: maroon\">patientId</span><span style=\"color: navy\"><b> -> </b></span> ref.reference = <span style=\"color: navy\">(</span>'Patient/' + %patientId<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> ref.type = <span style=\"color: blue\">'Patient'</span> <i>"subjectref"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"proceduresubject"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Encounter reference</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtProc.encounter = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><b> then</b><span style=\"color: navy\"> {\r\n</span> encounter.id<b> as </b><span style=\"color: maroon\">encounterId</span><span style=\"color: navy\"><b> -> </b></span> ref.reference = <span style=\"color: navy\">(</span>'Encounter/' + %encounterId<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> ref.type = <span style=\"color: blue\">'Encounter'</span> <i>"encounterref"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"procedureencounter"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Performed date/time</span>\r\n src.dateActe<b> as </b><span style=\"color: maroon\">performedDate</span><b> where </b>%performedDate.exists()<span style=\"color: navy\"><b> -> </b></span>tgtProc.performed = <span style=\"color: maroon\">performedDate</span> <i>"procedureperformed"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Performer</span>\r\n src.executant<b> as </b><span style=\"color: maroon\">performer</span><span style=\"color: navy\"><b> -> </b></span>tgtProc.performer<b> as </b><span style=\"color: maroon\">perf</span><b> then</b><span style=\"color: navy\"> {\r\n</span> performer<span style=\"color: navy\"><b> -> </b></span>perf.actor<b> as </b><span style=\"color: maroon\">actor</span><b> then</b><span style=\"color: navy\"> {\r\n</span> performer<span style=\"color: navy\"><b> -> </b></span>actor.display = <span style=\"color: maroon\">performer</span> <i>"performerdisplay"</i><span style=\"color: navy\">;</span>\r\n performer<span style=\"color: navy\"><b> -> </b></span>actor.type = <span style=\"color: blue\">'Practitioner'</span> <i>"performerType"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"performeractor"</i><span style=\"color: navy\">;</span>\r\n performer<span style=\"color: navy\"><b> -> </b></span> perf.function<b> as </b><span style=\"color: maroon\">function</span><span style=\"color: navy\">, </span> function.text = <span style=\"color: blue\">'Exécutant'</span> <i>"performerFunction"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"procedureperformer"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">LABORATORY OBSERVATION TRANSFORMATION</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<b>group </b>TransformLabObservation<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgtObs</span><span style=\"color: navy\"> : </span>Observation, <b>source</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>tgtObs.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>"setId"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Identifier</span>\r\n src.biologieId<b> as </b><span style=\"color: maroon\">bioId</span><span style=\"color: navy\"><b> -> </b></span>tgtObs.identifier<b> as </b><span style=\"color: maroon\">identifier</span><b> then</b><span style=\"color: navy\"> {\r\n</span> bioId<span style=\"color: navy\"><b> -> </b></span>identifier.system = <span style=\"color: blue\">'https://hospital.eu/ehr/biologie-id'</span> <i>"labidsystem"</i><span style=\"color: navy\">;</span>\r\n bioId<span style=\"color: navy\"><b> -> </b></span>identifier.value = <span style=\"color: maroon\">bioId</span> <i>"labidvalue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"labidentifier"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Status - map validation status or default to final</span>\r\n src.statutValidation<b> as </b><span style=\"color: maroon\">validation</span><b> where </b>validation = 'VALIDE'<span style=\"color: navy\"><b> -> </b></span>tgtObs.status = <span style=\"color: blue\">'final'</span> <i>"statusvalidated"</i><span style=\"color: navy\">;</span>\r\n src<b> where </b>src.statutValidation.exists().not()<span style=\"color: navy\"><b> -> </b></span>tgtObs.status = <span style=\"color: blue\">'final'</span> <i>"statusdefault"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Category</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.category<b> as </b><span style=\"color: maroon\">category</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>category.coding<b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>coding.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/observation-category'</span> <i>"categorysystem"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.code = <span style=\"color: blue\">'laboratory'</span> <i>"categorycode"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.display = <span style=\"color: blue\">'Laboratory'</span> <i>"categorydisplay"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"categorycoding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"labcategory"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Code (LOINC)</span>\r\n src.codeLoinc<b> as </b><span style=\"color: maroon\">loinc</span><span style=\"color: navy\"><b> -> </b></span>tgtObs.code<b> as </b><span style=\"color: maroon\">code</span><b> then</b><span style=\"color: navy\"> {\r\n</span> loinc<span style=\"color: navy\"><b> -> </b></span>code.coding<b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> loinc<span style=\"color: navy\"><b> -> </b></span>coding.system = <span style=\"color: blue\">'http://loinc.org'</span> <i>"codesystem"</i><span style=\"color: navy\">;</span>\r\n loinc<span style=\"color: navy\"><b> -> </b></span>coding.code = <span style=\"color: maroon\">loinc</span> <i>"codevalue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"labcoding"</i><span style=\"color: navy\">;</span>\r\n src.libelleTest<b> as </b><span style=\"color: maroon\">text</span><span style=\"color: navy\"><b> -> </b></span>code.text = <span style=\"color: maroon\">text</span> <i>"codetext"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"labcode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Subject</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><b> then</b><span style=\"color: navy\"> {\r\n</span> patient.id<b> as </b><span style=\"color: maroon\">patientId</span><span style=\"color: navy\"><b> -> </b></span> ref.reference = <span style=\"color: navy\">(</span>'Patient/' + %patientId<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> ref.type = <span style=\"color: blue\">'Patient'</span> <i>"subjectref"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"labsubject"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Effective date/time</span>\r\n src.datePrelevement<b> as </b><span style=\"color: maroon\">collectionDate</span><b> where </b>%collectionDate.exists()<span style=\"color: navy\"><b> -> </b></span>tgtObs.effective = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">collectionDate</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'dateTime'</span><span style=\"color: navy\">)</span> <i>"labeffective"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Value (numeric or text)</span>\r\n src.valeur<b> as </b><span style=\"color: maroon\">numValue</span><b> where </b>numValue.exists()<span style=\"color: navy\"><b> -> </b></span>tgtObs.value = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Quantity'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">qty</span><b> then</b><span style=\"color: navy\"> {\r\n</span> numValue<span style=\"color: navy\"><b> -> </b></span>qty.value = <span style=\"color: maroon\">numValue</span> <i>"quantityvalue"</i><span style=\"color: navy\">;</span>\r\n src.unite<b> as </b><span style=\"color: maroon\">unit</span><span style=\"color: navy\"><b> -> </b></span>qty.unit = <span style=\"color: maroon\">unit</span> <i>"quantityunit"</i><span style=\"color: navy\">;</span>\r\n src.unite<b> as </b><span style=\"color: maroon\">unit</span><span style=\"color: navy\"><b> -> </b></span>qty.code = <span style=\"color: maroon\">unit</span> <i>"quantitycode"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>qty.system = <span style=\"color: blue\">'http://unitsofmeasure.org'</span> <i>"quantitysystem"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"labvaluequantity"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">On n'a pas de résultats textuels de prévu</span>\r\n <span style=\"color: #b36b00\" title=\"Cet élément nétait pas défini avant R5\">// src.valeurTexte as textValue where textValue.exists() and src.valeur.exists().not() -> tgtObs.value = textValue "lab-value-string";</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Reference range</span>\r\n src<b> where </b>src.borneInfNormale.exists() or src.borneSupNormale.exists()<span style=\"color: navy\"><b> -> </b></span>tgtObs.referenceRange<b> as </b><span style=\"color: maroon\">range</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src.borneInfNormale<b> as </b><span style=\"color: maroon\">low</span><span style=\"color: navy\"><b> -> </b></span>range.low<b> as </b><span style=\"color: maroon\">lowQty</span><b> then</b><span style=\"color: navy\"> {\r\n</span> low<span style=\"color: navy\"><b> -> </b></span>lowQty.value = <span style=\"color: maroon\">low</span> <i>"reflowvalue"</i><span style=\"color: navy\">;</span>\r\n src.unite<b> as </b><span style=\"color: maroon\">unit</span><span style=\"color: navy\"><b> -> </b></span>lowQty.unit = <span style=\"color: maroon\">unit</span> <i>"reflowunit"</i><span style=\"color: navy\">;</span>\r\n src.unite<b> as </b><span style=\"color: maroon\">unit</span><span style=\"color: navy\"><b> -> </b></span>lowQty.code = <span style=\"color: maroon\">unit</span> <i>"reflowcode"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>lowQty.system = <span style=\"color: blue\">'http://unitsofmeasure.org'</span> <i>"reflowsystem"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"referencelow"</i><span style=\"color: navy\">;</span>\r\n src.borneSupNormale<b> as </b><span style=\"color: maroon\">high</span><span style=\"color: navy\"><b> -> </b></span>range.high<b> as </b><span style=\"color: maroon\">highQty</span><b> then</b><span style=\"color: navy\"> {\r\n</span> high<span style=\"color: navy\"><b> -> </b></span>highQty.value = <span style=\"color: maroon\">high</span> <i>"refhighvalue"</i><span style=\"color: navy\">;</span>\r\n src.unite<b> as </b><span style=\"color: maroon\">unit</span><span style=\"color: navy\"><b> -> </b></span>highQty.unit = <span style=\"color: maroon\">unit</span> <i>"refhighunit"</i><span style=\"color: navy\">;</span>\r\n src.unite<b> as </b><span style=\"color: maroon\">unit</span><span style=\"color: navy\"><b> -> </b></span>highQty.code = <span style=\"color: maroon\">unit</span> <i>"refhighcode"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>highQty.system = <span style=\"color: blue\">'http://unitsofmeasure.org'</span> <i>"refhighsystem"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"referencehigh"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"labreferencerange"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Performer</span>\r\n src.laboratoire<b> as </b><span style=\"color: maroon\">lab</span><span style=\"color: navy\"><b> -> </b></span>tgtObs.performer<b> as </b><span style=\"color: maroon\">performer</span><b> then</b><span style=\"color: navy\"> {\r\n</span> lab<span style=\"color: navy\"><b> -> </b></span>performer.display = <span style=\"color: maroon\">lab</span> <i>"performerdisplay"</i><span style=\"color: navy\">;</span>\r\n lab<span style=\"color: navy\"><b> -> </b></span>performer.type = <span style=\"color: blue\">'Organization'</span> <i>"performerType"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"labperformer"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">MEDICATION REQUEST TRANSFORMATION</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<b>group </b>TransformMedicationRequest<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgtMedReq</span><span style=\"color: navy\"> : </span>MedicationRequest, <b>source</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>tgtMedReq.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>"setId"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Identifier</span>\r\n src.prescriptionId<b> as </b><span style=\"color: maroon\">presId</span><span style=\"color: navy\"><b> -> </b></span>tgtMedReq.identifier<b> as </b><span style=\"color: maroon\">identifier</span><b> then</b><span style=\"color: navy\"> {\r\n</span> presId<span style=\"color: navy\"><b> -> </b></span>identifier.system = <span style=\"color: blue\">'https://hospital.eu/ehr/prescription-id'</span> <i>"medrequestidsystem"</i><span style=\"color: navy\">;</span>\r\n presId<span style=\"color: navy\"><b> -> </b></span>identifier.value = <span style=\"color: maroon\">presId</span> <i>"medrequestidvalue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"medrequestidentifier"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Status - assume unknown for historical prescriptions</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtMedReq.status = <span style=\"color: blue\">'unknown'</span> <i>"medrequeststatus"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Intent</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtMedReq.intent = <span style=\"color: blue\">'order'</span> <i>"medrequestintent"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Subject</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtMedReq.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><b> then</b><span style=\"color: navy\"> {\r\n</span> patient.id<b> as </b><span style=\"color: maroon\">patientId</span><span style=\"color: navy\"><b> -> </b></span> ref.reference = <span style=\"color: navy\">(</span>'Patient/' + %patientId<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> ref.type = <span style=\"color: blue\">'Patient'</span> <i>"subjectref"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"medrequestsubject"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Medication</span>\r\n src.denomination<b> as </b><span style=\"color: maroon\">denomination</span><span style=\"color: navy\"><b> -> </b></span>tgtMedReq.medication = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">medication</span><b> then</b><span style=\"color: navy\"> {\r\n</span> denomination<b> as </b><span style=\"color: maroon\">text</span><span style=\"color: navy\"><b> -> </b></span>medication.text = <span style=\"color: maroon\">text</span> <i>"medicationtext"</i><span style=\"color: navy\">;</span>\r\n src.codeAtc<b> as </b><span style=\"color: maroon\">atc</span><span style=\"color: navy\"><b> -> </b></span>medication.coding<b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> atc<span style=\"color: navy\"><b> -> </b></span>coding.system = <span style=\"color: blue\">'http://www.whocc.no/atc'</span> <i>"atcsystem"</i><span style=\"color: navy\">;</span>\r\n atc<span style=\"color: navy\"><b> -> </b></span>coding.code = <span style=\"color: maroon\">atc</span> <i>"atccode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"atccoding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"medicationdenomination"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Authored date</span>\r\n src.datePrescription<b> as </b><span style=\"color: maroon\">prescDate</span><span style=\"color: navy\"><b> -> </b></span>tgtMedReq.authoredOn = <span style=\"color: maroon\">prescDate</span> <i>"medauthored"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Requester</span>\r\n src.prescripteur<b> as </b><span style=\"color: maroon\">prescriber</span><span style=\"color: navy\"><b> -> </b></span>tgtMedReq.requester<b> as </b><span style=\"color: maroon\">requesterRef</span><b> then</b><span style=\"color: navy\"> {\r\n</span> prescriber<span style=\"color: navy\"><b> -> </b></span>requesterRef.display = <span style=\"color: maroon\">prescriber</span> <i>"requesterdisplay"</i><span style=\"color: navy\">;</span>\r\n prescriber<span style=\"color: navy\"><b> -> </b></span>requesterRef.type = <span style=\"color: blue\">'Practitioner'</span> <i>"requesterType"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"medrequester"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">POSOLOGIE TRANSFORMATION</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<b>group </b>setPoso<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">srcPoso</span>, <b>source</b> <span style=\"color: maroon\">srcPres</span>, <b>target</b> <span style=\"color: maroon\">tgtMedReq</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> srcPres<span style=\"color: navy\"><b> -> </b></span>tgtMedReq.dosageInstruction<b> as </b><span style=\"color: maroon\">dosageInstruction</span><b> then</b><span style=\"color: navy\"> {\r\n</span> <span style=\"color: navy\">// </span><span style=\"color: green\">Human-readable dosage text - construct from available fields</span>\r\n srcPoso<span style=\"color: navy\"><b> -> </b></span>dosageInstruction.text = <span style=\"color: navy\">(</span>'Prendre' + iif(%srcPoso.quantite.exists(), ' ' + %srcPoso.quantite.toString(), '1') + iif(%srcPoso.uniteQuantite.exists(), ' ' + %srcPoso.uniteQuantite, ' comprimé') + iif(%srcPoso.nombrePrisesParJour.exists(), ' ' + %srcPoso.nombrePrisesParJour.toString() + ' fois par jour', ' selon prescription')<span style=\"color: navy\">)</span> <i>"dosagetext"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Route of administration from prescription</span>\r\n srcPres.voieAdministration<b> as </b><span style=\"color: maroon\">route</span><span style=\"color: navy\"><b> -> </b></span>dosageInstruction.route<b> as </b><span style=\"color: maroon\">routeCC</span><b> then</b><span style=\"color: navy\"> {\r\n</span> route<span style=\"color: navy\"><b> -> </b></span>routeCC.coding<b> as </b><span style=\"color: maroon\">routeCoding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> route<span style=\"color: navy\"><b> -> </b></span>routeCoding.code = <span style=\"color: maroon\">route</span> <i>"routecode"</i><span style=\"color: navy\">;</span>\r\n route<span style=\"color: navy\"><b> -> </b></span>routeCoding.system = <span style=\"color: blue\">'https://smt.esante.gouv.fr/terminologie-standardterms'</span> <i>"routesystem"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"routecoding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"dosageroute"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Timing</span>\r\n srcPoso<span style=\"color: navy\"><b> -> </b></span>dosageInstruction.timing<b> as </b><span style=\"color: maroon\">timing</span><b> then</b><span style=\"color: navy\"> {\r\n</span> srcPoso<span style=\"color: navy\"><b> -> </b></span>timing.repeat<b> as </b><span style=\"color: maroon\">timingRepeat</span><b> then</b><span style=\"color: navy\"> {\r\n</span> <span style=\"color: navy\">// </span><span style=\"color: green\">Set prescription period as bounds if available</span>\r\n srcPres<b> where </b>srcPres.dateDebutPrescription.exists() or srcPres.dateFinPrescription.exists()<span style=\"color: navy\"><b> -> </b></span>timingRepeat.bounds = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Period'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">medReqPeriod</span><b> then</b><span style=\"color: navy\"> {\r\n</span> srcPres.dateDebutPrescription<b> as </b><span style=\"color: maroon\">startDate</span><span style=\"color: navy\"><b> -> </b></span>medReqPeriod.start = <span style=\"color: maroon\">startDate</span> <i>"periodstart"</i><span style=\"color: navy\">;</span>\r\n srcPres.dateFinPrescription<b> as </b><span style=\"color: maroon\">endDate</span><span style=\"color: navy\"><b> -> </b></span>medReqPeriod.end = <span style=\"color: maroon\">endDate</span> <i>"periodend"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"prescriptionperiod"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Frequency from posology</span>\r\n srcPoso.nombrePrisesParJour<b> as </b><span style=\"color: maroon\">frequency</span><span style=\"color: navy\"><b> -> </b></span>timingRepeat.frequency = <span style=\"color: maroon\">frequency</span> <i>"timingfrequency"</i><span style=\"color: navy\">;</span>\r\n srcPoso.nombrePrisesParJour<b> as </b><span style=\"color: maroon\">frequency</span><span style=\"color: navy\"><b> -> </b></span>timingRepeat.period = <span style=\"color: blue\">'1'</span> <i>"timingperiod"</i><span style=\"color: navy\">;</span>\r\n srcPoso.nombrePrisesParJour<b> as </b><span style=\"color: maroon\">frequency</span><span style=\"color: navy\"><b> -> </b></span>timingRepeat.periodUnit = <span style=\"color: blue\">'d'</span> <i>"timingperiodunit"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"timingrepeat"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"dosagetiming"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Dose and rate</span>\r\n srcPoso.quantite<b> as </b><span style=\"color: maroon\">quantity</span><span style=\"color: navy\"><b> -> </b></span>dosageInstruction.doseAndRate<b> as </b><span style=\"color: maroon\">doseRate</span><b> then</b><span style=\"color: navy\"> {\r\n</span> quantity<span style=\"color: navy\"><b> -> </b></span>doseRate.dose = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Quantity'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">doseQuantity</span><b> then</b><span style=\"color: navy\"> {\r\n</span> quantity<span style=\"color: navy\"><b> -> </b></span>doseQuantity.value = <span style=\"color: maroon\">quantity</span> <i>"dosevalue"</i><span style=\"color: navy\">;</span>\r\n srcPoso.uniteQuantite<b> as </b><span style=\"color: maroon\">unit</span><span style=\"color: navy\"><b> -> </b></span>doseQuantity.unit = <span style=\"color: maroon\">unit</span> <i>"doseunit"</i><span style=\"color: navy\">;</span>\r\n srcPoso.uniteQuantite<b> as </b><span style=\"color: maroon\">unit</span><span style=\"color: navy\"><b> -> </b></span>doseQuantity.code = <span style=\"color: maroon\">unit</span> <i>"dosecode"</i><span style=\"color: navy\">;</span>\r\n srcPoso<span style=\"color: navy\"><b> -> </b></span>doseQuantity.system = <span style=\"color: blue\">'http://unitsofmeasure.org'</span> <i>"dosesystem"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"dosequantity"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"doseandrate"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"dosageinstruction"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">VITAL SIGNS TRANSFORMATION</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<b>group </b>TransformVitalSigns<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgtObs</span><span style=\"color: navy\"> : </span>Observation, <b>source</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>tgtObs.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>"setId"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Identifier</span>\r\n src.soinId<b> as </b><span style=\"color: maroon\">soinId</span><span style=\"color: navy\"><b> -> </b></span>tgtObs.identifier<b> as </b><span style=\"color: maroon\">identifier</span><b> then</b><span style=\"color: navy\"> {\r\n</span> soinId<span style=\"color: navy\"><b> -> </b></span>identifier.system = <span style=\"color: blue\">'https://hospital.eu/ehr/soin-id'</span> <i>"soinidsystem"</i><span style=\"color: navy\">;</span>\r\n soinId<span style=\"color: navy\"><b> -> </b></span>identifier.value = <span style=\"color: maroon\">soinId</span> <i>"soinidvalue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"medrequestidentifier"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Status - assume final</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.status = <span style=\"color: blue\">'final'</span> <i>"status"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Category - vital-signs</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.category<b> as </b><span style=\"color: maroon\">category</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>category.coding<b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>coding.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/observation-category'</span> <i>"categorysystem"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.code = <span style=\"color: blue\">'vital-signs'</span> <i>"categorycode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"categorycoding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"category"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">code (LOINC)</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.code<b> as </b><span style=\"color: maroon\">code</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>code.coding<b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>coding.system = <span style=\"color: blue\">'http://loinc.org'</span> <i>"codesystem"</i><span style=\"color: navy\">;</span>\r\n src.codeLoinc<b> as </b><span style=\"color: maroon\">codeLoinc</span><span style=\"color: navy\"><b> -> </b></span>coding.code = <span style=\"color: maroon\">codeLoinc</span> <i>"codevalue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"coding"</i><span style=\"color: navy\">;</span>\r\n src.libelleTest<b> as </b><span style=\"color: maroon\">label</span><span style=\"color: navy\"><b> -> </b></span>code.text = <span style=\"color: maroon\">label</span> <i>"codetext"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"code"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Subject</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><b> then</b><span style=\"color: navy\"> {\r\n</span> patient.id<b> as </b><span style=\"color: maroon\">patientId</span><span style=\"color: navy\"><b> -> </b></span> ref.reference = <span style=\"color: navy\">(</span>'Patient/' + %patientId<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> ref.type = <span style=\"color: blue\">'Patient'</span> <i>"subjectref"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"obssubject"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Date de l'observation</span>\r\n src.dateMesure<b> as </b><span style=\"color: maroon\">date</span><b> where </b>%date.exists()<span style=\"color: navy\"><b> -> </b></span>tgtObs.effective = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">date</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'dateTime'</span><span style=\"color: navy\">)</span> <i>"effective"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Valeur (quantitiative)</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.value = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Quantity'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">qty</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src.valeur<b> as </b><span style=\"color: maroon\">mesure</span><span style=\"color: navy\"><b> -> </b></span>qty.value = <span style=\"color: maroon\">mesure</span> <i>"value"</i><span style=\"color: navy\">;</span>\r\n src.unite<b> as </b><span style=\"color: maroon\">unit</span><span style=\"color: navy\"><b> -> </b></span>qty.unit = <span style=\"color: maroon\">unit</span> <i>"unit"</i><span style=\"color: navy\">;</span>\r\n src.unite<b> as </b><span style=\"color: maroon\">unit</span><span style=\"color: navy\"><b> -> </b></span>qty.code = <span style=\"color: maroon\">unit</span> <i>"code"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>qty.system = <span style=\"color: blue\">'http://unitsofmeasure.org'</span> <i>"system"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"quantity"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">Blood pressure observation - would need separate entry with components</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">LIFESTYLE TRANSFORMATION - SEPARATE OBSERVATIONS</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<b>group </b>TransformTobaccoObservation<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgtObs</span><span style=\"color: navy\"> : </span>Observation, <b>source</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>tgtObs.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>"setId"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Identifier</span>\r\n src.styleVieId<b> as </b><span style=\"color: maroon\">lsId</span><span style=\"color: navy\"><b> -> </b></span>tgtObs.identifier<b> as </b><span style=\"color: maroon\">identifier</span><b> then</b><span style=\"color: navy\"> {\r\n</span> lsId<span style=\"color: navy\"><b> -> </b></span>identifier.system = <span style=\"color: blue\">'https://hospital.eu/ehr/lifestyle-id'</span> <i>"lifestyleidsystem"</i><span style=\"color: navy\">;</span>\r\n lsId<span style=\"color: navy\"><b> -> </b></span>identifier.value = <span style=\"color: navy\">(</span>%lsId & '-tobacco'<span style=\"color: navy\">)</span> <i>"lifestyleidvalue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"lifestyleidentifier"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Status</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.status = <span style=\"color: blue\">'final'</span> <i>"lifestylestatus"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Category - social-history</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.category<b> as </b><span style=\"color: maroon\">category</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>category.coding<b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>coding.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/observation-category'</span> <i>"categorysystem"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.code = <span style=\"color: blue\">'social-history'</span> <i>"categorycode"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.display = <span style=\"color: blue\">'Social History'</span> <i>"categorydisplay"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"categorycoding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"lifestylecategory"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Code - tobacco use status</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.code<b> as </b><span style=\"color: maroon\">code</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>code.coding<b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>coding.system = <span style=\"color: blue\">'http://loinc.org'</span> <i>"codesystem"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.code = <span style=\"color: blue\">'72166-2'</span> <i>"codevalue"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.display = <span style=\"color: blue\">'Tobacco smoking status'</span> <i>"codedisplay"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"tobaccocoding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"tobaccocode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Subject</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><b> then</b><span style=\"color: navy\"> {\r\n</span> patient.id<b> as </b><span style=\"color: maroon\">patientId</span><span style=\"color: navy\"><b> -> </b></span> ref.reference = <span style=\"color: navy\">(</span>'Patient/' + %patientId<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> ref.type = <span style=\"color: blue\">'Patient'</span> <i>"subjectref"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"lifestylesubject"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Effective date</span>\r\n src.dateRecueil<b> as </b><span style=\"color: maroon\">collectDate</span><b> where </b>%collectDate.exists()<span style=\"color: navy\"><b> -> </b></span>tgtObs.effective = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">collectDate</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'dateTime'</span><span style=\"color: navy\">)</span> <i>"lifestyleeffective"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Value</span>\r\n src.consommationTabac<b> as </b><span style=\"color: maroon\">tobacco</span><span style=\"color: navy\"><b> -> </b></span>tgtObs.value = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">valueCC</span><b> then</b><span style=\"color: navy\"> {\r\n</span> tobacco<span style=\"color: navy\"><b> -> </b></span>valueCC.text = <span style=\"color: maroon\">tobacco</span> <i>"tobaccovaluetext"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"tobaccovalue"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>TransformAlcoholObservation<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgtObs</span><span style=\"color: navy\"> : </span>Observation, <b>source</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>tgtObs.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>"setId"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Identifier</span>\r\n src.styleVieId<b> as </b><span style=\"color: maroon\">lsId</span><span style=\"color: navy\"><b> -> </b></span>tgtObs.identifier<b> as </b><span style=\"color: maroon\">identifier</span><b> then</b><span style=\"color: navy\"> {\r\n</span> lsId<span style=\"color: navy\"><b> -> </b></span>identifier.system = <span style=\"color: blue\">'https://hospital.eu/ehr/lifestyle-id'</span> <i>"lifestyleidsystem"</i><span style=\"color: navy\">;</span>\r\n lsId<span style=\"color: navy\"><b> -> </b></span>identifier.value = <span style=\"color: navy\">(</span>%lsId & '-alcohol'<span style=\"color: navy\">)</span> <i>"lifestyleidvalue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"lifestyleidentifier"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Status</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.status = <span style=\"color: blue\">'final'</span> <i>"lifestylestatus"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Category - social-history</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.category<b> as </b><span style=\"color: maroon\">category</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>category.coding<b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>coding.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/observation-category'</span> <i>"categorysystem"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.code = <span style=\"color: blue\">'social-history'</span> <i>"categorycode"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.display = <span style=\"color: blue\">'Social History'</span> <i>"categorydisplay"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"categorycoding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"lifestylecategory"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Code - alcohol use</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.code<b> as </b><span style=\"color: maroon\">code</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>code.coding<b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>coding.system = <span style=\"color: blue\">'http://loinc.org'</span> <i>"codesystem"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.code = <span style=\"color: blue\">'11331-6'</span> <i>"codevalue"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.display = <span style=\"color: blue\">'History of alcohol use'</span> <i>"codedisplay"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"alcoholcoding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"alcoholcode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Subject</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><b> then</b><span style=\"color: navy\"> {\r\n</span> patient.id<b> as </b><span style=\"color: maroon\">patientId</span><span style=\"color: navy\"><b> -> </b></span> ref.reference = <span style=\"color: navy\">(</span>'Patient/' + %patientId<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> ref.type = <span style=\"color: blue\">'Patient'</span> <i>"subjectref"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"lifestylesubject"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Effective date</span>\r\n src.dateRecueil<b> as </b><span style=\"color: maroon\">collectDate</span><b> where </b>%collectDate.exists()<span style=\"color: navy\"><b> -> </b></span>tgtObs.effective = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">collectDate</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'dateTime'</span><span style=\"color: navy\">)</span> <i>"lifestyleeffective"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Value</span>\r\n src.consommationAlcool<b> as </b><span style=\"color: maroon\">alcohol</span><span style=\"color: navy\"><b> -> </b></span>tgtObs.value = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">valueCC</span><b> then</b><span style=\"color: navy\"> {\r\n</span> alcohol<span style=\"color: navy\"><b> -> </b></span>valueCC.text = <span style=\"color: maroon\">alcohol</span> <i>"alcoholvaluetext"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"alcoholvalue"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>TransformDrugObservation<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgtObs</span><span style=\"color: navy\"> : </span>Observation, <b>source</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>tgtObs.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>"setId"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Identifier</span>\r\n src.styleVieId<b> as </b><span style=\"color: maroon\">lsId</span><span style=\"color: navy\"><b> -> </b></span>tgtObs.identifier<b> as </b><span style=\"color: maroon\">identifier</span><b> then</b><span style=\"color: navy\"> {\r\n</span> lsId<span style=\"color: navy\"><b> -> </b></span>identifier.system = <span style=\"color: blue\">'https://hospital.eu/ehr/lifestyle-id'</span> <i>"lifestyleidsystem"</i><span style=\"color: navy\">;</span>\r\n lsId<span style=\"color: navy\"><b> -> </b></span>identifier.value = <span style=\"color: navy\">(</span>%lsId & '-drugs'<span style=\"color: navy\">)</span> <i>"lifestyleidvalue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"lifestyleidentifier"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Status</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.status = <span style=\"color: blue\">'final'</span> <i>"lifestylestatus"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Category - social-history</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.category<b> as </b><span style=\"color: maroon\">category</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>category.coding<b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>coding.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/observation-category'</span> <i>"categorysystem"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.code = <span style=\"color: blue\">'social-history'</span> <i>"categorycode"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.display = <span style=\"color: blue\">'Social History'</span> <i>"categorydisplay"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"categorycoding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"lifestylecategory"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Code - drug use</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.code<b> as </b><span style=\"color: maroon\">code</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>code.coding<b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>coding.system = <span style=\"color: blue\">'http://loinc.org'</span> <i>"codesystem"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.code = <span style=\"color: blue\">'11342-3'</span> <i>"codevalue"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.display = <span style=\"color: blue\">'History of drug use'</span> <i>"codedisplay"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"drugcoding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"drugcode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Subject</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><b> then</b><span style=\"color: navy\"> {\r\n</span> patient.id<b> as </b><span style=\"color: maroon\">patientId</span><span style=\"color: navy\"><b> -> </b></span> ref.reference = <span style=\"color: navy\">(</span>'Patient/' + %patientId<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> ref.type = <span style=\"color: blue\">'Patient'</span> <i>"subjectref"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"lifestylesubject"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Effective date</span>\r\n src.dateRecueil<b> as </b><span style=\"color: maroon\">collectDate</span><b> where </b>%collectDate.exists()<span style=\"color: navy\"><b> -> </b></span>tgtObs.effective = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">collectDate</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'dateTime'</span><span style=\"color: navy\">)</span> <i>"lifestyleeffective"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Value</span>\r\n src.consommationAutresDrogues<b> as </b><span style=\"color: maroon\">drugs</span><span style=\"color: navy\"><b> -> </b></span>tgtObs.value = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">valueCC</span><b> then</b><span style=\"color: navy\"> {\r\n</span> drugs<span style=\"color: navy\"><b> -> </b></span>valueCC.text = <span style=\"color: maroon\">drugs</span> <i>"drugvaluetext"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"drugvalue"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>TransformPhysicalActivityObservation<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgtObs</span><span style=\"color: navy\"> : </span>Observation, <b>source</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>tgtObs.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>"setId"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Identifier</span>\r\n src.styleVieId<b> as </b><span style=\"color: maroon\">lsId</span><span style=\"color: navy\"><b> -> </b></span>tgtObs.identifier<b> as </b><span style=\"color: maroon\">identifier</span><b> then</b><span style=\"color: navy\"> {\r\n</span> lsId<span style=\"color: navy\"><b> -> </b></span>identifier.system = <span style=\"color: blue\">'https://hospital.eu/ehr/lifestyle-id'</span> <i>"lifestyleidsystem"</i><span style=\"color: navy\">;</span>\r\n lsId<span style=\"color: navy\"><b> -> </b></span>identifier.value = <span style=\"color: navy\">(</span>%lsId & '-physical'<span style=\"color: navy\">)</span> <i>"lifestyleidvalue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"lifestyleidentifier"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Status</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.status = <span style=\"color: blue\">'final'</span> <i>"lifestylestatus"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Category - social-history</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.category<b> as </b><span style=\"color: maroon\">category</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>category.coding<b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>coding.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/observation-category'</span> <i>"categorysystem"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.code = <span style=\"color: blue\">'social-history'</span> <i>"categorycode"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.display = <span style=\"color: blue\">'Social History'</span> <i>"categorydisplay"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"categorycoding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"lifestylecategory"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Code - physical activity</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.code<b> as </b><span style=\"color: maroon\">code</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>code.coding<b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>coding.system = <span style=\"color: blue\">'http://loinc.org'</span> <i>"codesystem"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.code = <span style=\"color: blue\">'67504-6'</span> <i>"codevalue"</i><span style=\"color: navy\">;</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>coding.display = <span style=\"color: blue\">'Exercise activity'</span> <i>"codedisplay"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"physicalcoding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"physicalcode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Subject</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtObs.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><b> then</b><span style=\"color: navy\"> {\r\n</span> patient.id<b> as </b><span style=\"color: maroon\">patientId</span><span style=\"color: navy\"><b> -> </b></span> ref.reference = <span style=\"color: navy\">(</span>'Patient/' + %patientId<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> ref.type = <span style=\"color: blue\">'Patient'</span> <i>"subjectref"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"lifestylesubject"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Effective date</span>\r\n src.dateRecueil<b> as </b><span style=\"color: maroon\">collectDate</span><b> where </b>%collectDate.exists()<span style=\"color: navy\"><b> -> </b></span>tgtObs.effective = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">collectDate</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'dateTime'</span><span style=\"color: navy\">)</span> <i>"lifestyleeffective"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Value</span>\r\n src.activitePhysique<b> as </b><span style=\"color: maroon\">physical</span><span style=\"color: navy\"><b> -> </b></span>tgtObs.value = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">valueCC</span><b> then</b><span style=\"color: navy\"> {\r\n</span> physical<span style=\"color: navy\"><b> -> </b></span>valueCC.text = <span style=\"color: maroon\">physical</span> <i>"physicalvaluetext"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"physicalvalue"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">MEDICATION ADMINISTRATION TRANSFORMATION</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">========================================================================</span>\r\n<b>group </b>TransformMedicationAdministrationWOOrder<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgtMedAdmin</span><span style=\"color: navy\"> : </span>MedicationAdministration, <b>source</b> <span style=\"color: maroon\">patient</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>tgtMedAdmin.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>"setId"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Identifier</span>\r\n src.administrationId<b> as </b><span style=\"color: maroon\">adminId</span><span style=\"color: navy\"><b> -> </b></span>tgtMedAdmin.identifier<b> as </b><span style=\"color: maroon\">identifier</span><b> then</b><span style=\"color: navy\"> {\r\n</span> adminId<span style=\"color: navy\"><b> -> </b></span>identifier.system = <span style=\"color: blue\">'https://hospital.eu/ehr/administration-id'</span> <i>"adminidsystem"</i><span style=\"color: navy\">;</span>\r\n adminId<span style=\"color: navy\"><b> -> </b></span>identifier.value = <span style=\"color: maroon\">adminId</span> <i>"adminidvalue"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"adminidentifier"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Status - assume completed</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtMedAdmin.status = <span style=\"color: blue\">'completed'</span> <i>"adminstatus"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Subject</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtMedAdmin.subject = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><b> then</b><span style=\"color: navy\"> {\r\n</span> patient.id<b> as </b><span style=\"color: maroon\">patientId</span><span style=\"color: navy\"><b> -> </b></span> ref.reference = <span style=\"color: navy\">(</span>'Patient/' + %patientId<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> ref.type = <span style=\"color: blue\">'Patient'</span> <i>"subjectref"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"adminsubject"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Medication</span>\r\n src.denomination<b> as </b><span style=\"color: maroon\">denomination</span><span style=\"color: navy\"><b> -> </b></span>tgtMedAdmin.medication = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">medication</span><b> then</b><span style=\"color: navy\"> {\r\n</span> denomination<span style=\"color: navy\"><b> -> </b></span>medication.text = <span style=\"color: maroon\">denomination</span> <i>"medicationtext"</i><span style=\"color: navy\">;</span>\r\n src.codeAtc<b> as </b><span style=\"color: maroon\">atc</span><span style=\"color: navy\"><b> -> </b></span>medication.coding<b> as </b><span style=\"color: maroon\">coding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> atc<span style=\"color: navy\"><b> -> </b></span>coding.system = <span style=\"color: blue\">'http://www.whocc.no/atc'</span> <i>"atcsystem"</i><span style=\"color: navy\">;</span>\r\n atc<span style=\"color: navy\"><b> -> </b></span>coding.code = <span style=\"color: maroon\">atc</span> <i>"atccode"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"atccoding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"adminmedication"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Effective period</span>\r\n src<b> where </b>src.dateHeureDebut.exists() or src.dateHeureFin.exists()<span style=\"color: navy\"><b> -> </b></span>tgtMedAdmin.effective = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Period'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">period</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src.dateHeureDebut<b> as </b><span style=\"color: maroon\">startDate</span><span style=\"color: navy\"><b> -> </b></span>period.start = <span style=\"color: maroon\">startDate</span> <i>"periodstart"</i><span style=\"color: navy\">;</span>\r\n src.dateHeureFin<b> as </b><span style=\"color: maroon\">endDate</span><span style=\"color: navy\"><b> -> </b></span>period.end = <span style=\"color: maroon\">endDate</span> <i>"periodend"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"admineffective"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">// </span><span style=\"color: green\">Dosage</span>\r\n src<b> where </b>src.quantite.exists() or src.voieAdministration.exists()<span style=\"color: navy\"><b> -> </b></span>tgtMedAdmin.dosage<b> as </b><span style=\"color: maroon\">dosage</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src.quantite<b> as </b><span style=\"color: maroon\">quantity</span><span style=\"color: navy\"><b> -> </b></span>dosage.dose = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Quantity'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">dose</span><b> then</b><span style=\"color: navy\"> {\r\n</span> quantity<span style=\"color: navy\"><b> -> </b></span>dose.value = <span style=\"color: maroon\">quantity</span> <i>"dosevalue"</i><span style=\"color: navy\">;</span>\r\n src.uniteQuantite<b> as </b><span style=\"color: maroon\">unit</span><span style=\"color: navy\"><b> -> </b></span>dose.unit = <span style=\"color: maroon\">unit</span> <i>"doseunit"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"admindose"</i><span style=\"color: navy\">;</span>\r\n src.voieAdministration<b> as </b><span style=\"color: maroon\">route</span><span style=\"color: navy\"><b> -> </b></span>dosage.route<b> as </b><span style=\"color: maroon\">routeCC</span><b> then</b><span style=\"color: navy\"> {\r\n</span> route<span style=\"color: navy\"><b> -> </b></span>routeCC.coding<b> as </b><span style=\"color: maroon\">routeCoding</span><b> then</b><span style=\"color: navy\"> {\r\n</span> route<span style=\"color: navy\"><b> -> </b></span>routeCoding.code = <span style=\"color: maroon\">route</span> <i>"routecode"</i><span style=\"color: navy\">;</span>\r\n route<span style=\"color: navy\"><b> -> </b></span>routeCoding.system = <span style=\"color: blue\">'https://smt.esante.gouv.fr/terminologie-standardterms'</span> <i>"routesystem"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"routecoding"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"dosageroute"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"admindosage"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>TransformMedicationAdministrationWOrder<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgtMedAdmin</span><span style=\"color: navy\"> : </span>MedicationAdministration, <b>source</b> <span style=\"color: maroon\">patient</span>, <b>source</b> <span style=\"color: maroon\">order</span><span style=\"color: navy\">)</span><b> extends </b>TransformMedicationAdministrationWOOrder<span style=\"color: navy\"> {\r\n</span> <span style=\"color: navy\">// </span><span style=\"color: green\">Context (encounter) reference</span>\r\n src<span style=\"color: navy\"><b> -> </b></span>tgtMedAdmin.request = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">ref</span><b> then</b><span style=\"color: navy\"> {\r\n</span> order.id<b> as </b><span style=\"color: maroon\">orderId</span><span style=\"color: navy\"><b> -> </b></span> ref.reference = <span style=\"color: navy\">(</span>'MedicationRequest/' + %orderId<span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> ref.type = <span style=\"color: blue\">'MedicationRequest'</span> <i>"encounterref"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"admincontext"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>setEntryRequestAndFullUrl<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">newRes</span>, <b>target</b> <span style=\"color: maroon\">tgtEntry</span><span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span> newRes.id<b> as </b><span style=\"color: maroon\">newResId</span><b> then</b><span style=\"color: navy\"> {\r\n</span> newResId<span style=\"color: navy\"><b> -> </b></span>tgtEntry.fullUrl = <span style=\"color: navy\">(</span>'urn:ehr:' + %newRes.type().name + '/' + %newResId<span style=\"color: navy\">)</span> <i>"setFullUrl"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"setResourceType"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
},
"url" : "https://interop.aphp.fr/ig/fhir/dm/StructureMap/EHR2FSL",
"version" : "0.1.0",
"name" : "EHR2FSL",
"title" : "Transforms EHR logical model data to FHIR Semantic Layer resources using Bundle as container",
"status" : "draft",
"date" : "2025-10-23T20:49:03+00:00",
"publisher" : "AP-HP",
"contact" : [
{
"name" : "AP-HP",
"telecom" : [
{
"system" : "url",
"value" : "https://aphp.fr"
}
]
}
],
"description" : "Transforms EHR logical model data to FHIR Semantic Layer resources using Bundle as container",
"jurisdiction" : [
{
"coding" : [
{
"system" : "urn:iso:std:iso:3166",
"code" : "FR",
"display" : "France"
}
]
}
],
"structure" : [
{
"url" : "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/ehr",
"mode" : "source",
"alias" : "EHR"
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/Bundle",
"mode" : "target",
"alias" : "Bundle"
}
],
"group" : [
{
"name" : "EHR2FSL",
"typeMode" : "none",
"input" : [
{
"name" : "src",
"type" : "EHR",
"mode" : "source"
},
{
"name" : "bundle",
"type" : "Bundle",
"mode" : "target"
}
],
"rule" : [
{
"name" : "bundleid",
"source" : [
{
"context" : "src"
}
],
"target" : [
{
"context" : "bundle",
"contextType" : "variable",
"element" : "id",
"transform" : "uuid"
}
]
},
{
"name" : "bundletype",
"source" : [
{
"context" : "src"
}
],
"target" : [
{
"context" : "bundle",
"contextType" : "variable",
"element" : "type",
"transform" : "copy",
"parameter" : [
{
"valueString" : "collection"
}
]
}
]
},
{
"name" : "setTimestamp",
"source" : [
{
"context" : "src"
}
],
"target" : [
{
"contextType" : "variable",
"variable" : "timestamp",
"transform" : "evaluate",
"parameter" : [
{
"valueString" : "now()"
}
]
}
],
"rule" : [
{
"name" : "affectTimestamp",
"source" : [
{
"context" : "src"
}
],
"target" : [
{
"context" : "bundle",
"contextType" : "variable",
"element" : "timestamp",
"transform" : "copy",
"parameter" : [
{
"valueId" : "timestamp"
}
]
}
]
}
]
},
{
"name" : "patiententry",
"source" : [
{
"context" : "src",
"element" : "patient",
"variable" : "patient"
}
],
"target" : [
{
"context" : "bundle",
"contextType" : "variable",
"element" : "entry",
"variable" : "patientEntry"
}
],
"rule" : [
{
"name" : "createpatient",
"source" : [
{
"context" : "patient"
}
],
"target" : [
{
"context" : "patientEntry",
"contextType" : "variable",
"element" : "resource",
"variable" : "dmPatient",
"transform" : "create",
"parameter" : [
{
"valueString" : "Patient"
}
]
}
],
"rule" : [
{
"name" : "transformpatient",
"source" : [
{
"context" : "patient"
}
],
"dependent" : [
{
"name" : "TransformPatient",
"variable" : [
"patient",
"dmPatient"
]
}
]
},
{
"name" : "setRequestAndFullUrl",
"source" : [
{
"context" : "patient"
}
],
"dependent" : [
{
"name" : "setEntryRequestAndFullUrl",
"variable" : [
"dmPatient",
"patientEntry"
]
}
]
},
{
"name" : "transformpatientAdresse",
"source" : [
{
"context" : "src",
"element" : "patientAdresse",
"variable" : "patientAdresse",
"condition" : "patientAdresse.patientId = %patient.patientId"
}
],
"dependent" : [
{
"name" : "setAddress",
"variable" : [
"patientAdresse",
"dmPatient"
]
}
]
},
{
"name" : "encounterentries",
"source" : [
{
"context" : "src",
"element" : "donneesPmsi",
"variable" : "pmsi",
"condition" : "pmsi.patientId = %patient.patientId"
}
],
"target" : [
{
"context" : "bundle",
"contextType" : "variable",
"element" : "entry",
"variable" : "encounterEntry"
}
],
"rule" : [
{
"name" : "createencounter",
"source" : [
{
"context" : "pmsi"
}
],
"target" : [
{
"context" : "encounterEntry",
"contextType" : "variable",
"element" : "resource",
"variable" : "dmEncounter",
"transform" : "create",
"parameter" : [
{
"valueString" : "Encounter"
}
]
}
],
"rule" : [
{
"name" : "transformencounter",
"source" : [
{
"context" : "pmsi"
}
],
"dependent" : [
{
"name" : "TransformEncounter",
"variable" : [
"pmsi",
"dmEncounter",
"dmPatient"
]
}
]
},
{
"name" : "setRequestAndFullUrl",
"source" : [
{
"context" : "pmsi"
}
],
"dependent" : [
{
"name" : "setEntryRequestAndFullUrl",
"variable" : [
"dmEncounter",
"encounterEntry"
]
}
]
},
{
"name" : "conditionentries",
"source" : [
{
"context" : "src",
"element" : "diagnostics",
"variable" : "diag",
"condition" : "(diag.patientId = %patient.patientId) and (diag.pmsiId = %pmsi.pmsiId)"
}
],
"target" : [
{
"context" : "bundle",
"contextType" : "variable",
"element" : "entry",
"variable" : "conditionEntry"
}
],
"rule" : [
{
"name" : "createcondition",
"source" : [
{
"context" : "diag"
}
],
"target" : [
{
"context" : "conditionEntry",
"contextType" : "variable",
"element" : "resource",
"variable" : "dmCondition",
"transform" : "create",
"parameter" : [
{
"valueString" : "Condition"
}
]
}
],
"rule" : [
{
"name" : "transformcondition",
"source" : [
{
"context" : "diag"
}
],
"dependent" : [
{
"name" : "TransformCondition",
"variable" : [
"diag",
"dmCondition",
"dmPatient",
"dmEncounter"
]
}
]
},
{
"name" : "setRequestAndFullUrl",
"source" : [
{
"context" : "diag"
}
],
"dependent" : [
{
"name" : "setEntryRequestAndFullUrl",
"variable" : [
"dmCondition",
"conditionEntry"
]
}
]
}
]
}
]
},
{
"name" : "procedureentries",
"source" : [
{
"context" : "src",
"element" : "actes",
"variable" : "acte",
"condition" : "(acte.patientId = %patient.patientId) and (acte.pmsiId = %pmsi.pmsiId)"
}
],
"target" : [
{
"context" : "bundle",
"contextType" : "variable",
"element" : "entry",
"variable" : "procedureEntry"
}
],
"rule" : [
{
"name" : "createprocedure",
"source" : [
{
"context" : "acte"
}
],
"target" : [
{
"context" : "procedureEntry",
"contextType" : "variable",
"element" : "resource",
"variable" : "dmProcedure",
"transform" : "create",
"parameter" : [
{
"valueString" : "Procedure"
}
]
}
],
"rule" : [
{
"name" : "transformprocedure",
"source" : [
{
"context" : "acte"
}
],
"dependent" : [
{
"name" : "TransformProcedure",
"variable" : [
"acte",
"dmProcedure",
"dmPatient",
"dmEncounter"
]
}
]
},
{
"name" : "setRequestAndFullUrl",
"source" : [
{
"context" : "acte"
}
],
"dependent" : [
{
"name" : "setEntryRequestAndFullUrl",
"variable" : [
"dmProcedure",
"procedureEntry"
]
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "labentries",
"source" : [
{
"context" : "src",
"element" : "biologie",
"variable" : "lab",
"condition" : "lab.patientId = %patient.patientId"
}
],
"target" : [
{
"context" : "bundle",
"contextType" : "variable",
"element" : "entry",
"variable" : "labEntry"
}
],
"rule" : [
{
"name" : "createlabobs",
"source" : [
{
"context" : "lab"
}
],
"target" : [
{
"context" : "labEntry",
"contextType" : "variable",
"element" : "resource",
"variable" : "dmLab",
"transform" : "create",
"parameter" : [
{
"valueString" : "Observation"
}
]
}
],
"rule" : [
{
"name" : "transformLabObs",
"source" : [
{
"context" : "lab"
}
],
"dependent" : [
{
"name" : "TransformLabObservation",
"variable" : [
"lab",
"dmLab",
"dmPatient"
]
}
]
},
{
"name" : "setRequestAndFullUrl",
"source" : [
{
"context" : "lab"
}
],
"dependent" : [
{
"name" : "setEntryRequestAndFullUrl",
"variable" : [
"dmLab",
"labEntry"
]
}
]
}
]
}
]
},
{
"name" : "medicationentries",
"source" : [
{
"context" : "src",
"element" : "prescription",
"variable" : "pres",
"condition" : "pres.patientId = %patient.patientId"
}
],
"target" : [
{
"context" : "bundle",
"contextType" : "variable",
"element" : "entry",
"variable" : "medReqEntry"
}
],
"rule" : [
{
"name" : "createmedreq",
"source" : [
{
"context" : "pres"
}
],
"target" : [
{
"context" : "medReqEntry",
"contextType" : "variable",
"element" : "resource",
"variable" : "dmMedReq",
"transform" : "create",
"parameter" : [
{
"valueString" : "MedicationRequest"
}
]
}
],
"rule" : [
{
"name" : "createmedrequest",
"source" : [
{
"context" : "src"
}
],
"dependent" : [
{
"name" : "TransformMedicationRequest",
"variable" : [
"pres",
"dmMedReq",
"dmPatient"
]
}
]
},
{
"name" : "setRequestAndFullUrl",
"source" : [
{
"context" : "pres"
}
],
"dependent" : [
{
"name" : "setEntryRequestAndFullUrl",
"variable" : [
"dmMedReq",
"medReqEntry"
]
}
]
},
{
"name" : "transformPoso",
"source" : [
{
"context" : "src",
"element" : "posologie",
"variable" : "poso",
"condition" : "%poso.prescriptionId = %pres.prescriptionId"
}
],
"dependent" : [
{
"name" : "setPoso",
"variable" : [
"poso",
"pres",
"dmMedReq"
]
}
]
},
{
"name" : "administrationentries",
"source" : [
{
"context" : "src",
"element" : "administration",
"variable" : "admin",
"condition" : "(admin.patientId = %patient.patientId) and (admin.prescriptionId = pres.prescriptionId)"
}
],
"target" : [
{
"context" : "bundle",
"contextType" : "variable",
"element" : "entry",
"variable" : "adminEntry"
}
],
"rule" : [
{
"name" : "createmedadmin",
"source" : [
{
"context" : "admin"
}
],
"target" : [
{
"context" : "adminEntry",
"contextType" : "variable",
"element" : "resource",
"variable" : "dmAdmin",
"transform" : "create",
"parameter" : [
{
"valueString" : "MedicationAdministration"
}
]
}
],
"rule" : [
{
"name" : "createmedadmin",
"source" : [
{
"context" : "admin"
}
],
"dependent" : [
{
"name" : "TransformMedicationAdministrationWOrder",
"variable" : [
"admin",
"dmAdmin",
"dmPatient",
"dmMedReq"
]
}
]
},
{
"name" : "setRequestAndFullUrl",
"source" : [
{
"context" : "admin"
}
],
"dependent" : [
{
"name" : "setEntryRequestAndFullUrl",
"variable" : [
"dmAdmin",
"adminEntry"
]
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "lifestyleentries",
"source" : [
{
"context" : "src",
"element" : "styleVie",
"variable" : "lifestyle",
"condition" : "lifestyle.patientId = %patient.patientId"
}
],
"rule" : [
{
"name" : "tobaccoentries",
"source" : [
{
"context" : "lifestyle",
"element" : "consommationTabac",
"variable" : "tobacco",
"condition" : "tobacco.exists()"
}
],
"target" : [
{
"context" : "bundle",
"contextType" : "variable",
"element" : "entry",
"variable" : "tobaccoEntry"
}
],
"rule" : [
{
"name" : "createtobaccoobs",
"source" : [
{
"context" : "tobacco"
}
],
"target" : [
{
"context" : "tobaccoEntry",
"contextType" : "variable",
"element" : "resource",
"variable" : "tobaccoObs",
"transform" : "create",
"parameter" : [
{
"valueString" : "Observation"
}
]
}
],
"rule" : [
{
"name" : "createtobaccoobs",
"source" : [
{
"context" : "lifestyle"
}
],
"dependent" : [
{
"name" : "TransformTobaccoObservation",
"variable" : [
"lifestyle",
"tobaccoObs",
"dmPatient"
]
}
]
},
{
"name" : "setRequestAndFullUrl",
"source" : [
{
"context" : "lifestyle"
}
],
"dependent" : [
{
"name" : "setEntryRequestAndFullUrl",
"variable" : [
"tobaccoObs",
"tobaccoEntry"
]
}
]
}
]
}
]
},
{
"name" : "alcoholentries",
"source" : [
{
"context" : "lifestyle",
"element" : "consommationAlcool",
"variable" : "alcohol",
"condition" : "alcohol.exists()"
}
],
"target" : [
{
"context" : "bundle",
"contextType" : "variable",
"element" : "entry",
"variable" : "alcoholEntry"
}
],
"rule" : [
{
"name" : "createalcoholobs",
"source" : [
{
"context" : "alcohol"
}
],
"target" : [
{
"context" : "alcoholEntry",
"contextType" : "variable",
"element" : "resource",
"variable" : "alcoholObs",
"transform" : "create",
"parameter" : [
{
"valueString" : "Observation"
}
]
}
],
"rule" : [
{
"name" : "createalcoholobs",
"source" : [
{
"context" : "lifestyle"
}
],
"dependent" : [
{
"name" : "TransformAlcoholObservation",
"variable" : [
"lifestyle",
"alcoholObs",
"dmPatient"
]
}
]
},
{
"name" : "setRequestAndFullUrl",
"source" : [
{
"context" : "lifestyle"
}
],
"dependent" : [
{
"name" : "setEntryRequestAndFullUrl",
"variable" : [
"alcoholObs",
"alcoholEntry"
]
}
]
}
]
}
]
},
{
"name" : "drugentries",
"source" : [
{
"context" : "lifestyle",
"element" : "consommationAutresDrogues",
"variable" : "drugs",
"condition" : "drugs.exists()"
}
],
"target" : [
{
"context" : "bundle",
"contextType" : "variable",
"element" : "entry",
"variable" : "drugEntry"
}
],
"rule" : [
{
"name" : "createdrugobs",
"source" : [
{
"context" : "drugs"
}
],
"target" : [
{
"context" : "drugEntry",
"contextType" : "variable",
"element" : "resource",
"variable" : "drugObs",
"transform" : "create",
"parameter" : [
{
"valueString" : "Observation"
}
]
}
],
"rule" : [
{
"name" : "createdrugobs",
"source" : [
{
"context" : "lifestyle"
}
],
"dependent" : [
{
"name" : "TransformDrugObservation",
"variable" : [
"lifestyle",
"drugObs",
"dmPatient"
]
}
]
},
{
"name" : "setRequestAndFullUrl",
"source" : [
{
"context" : "lifestyle"
}
],
"dependent" : [
{
"name" : "setEntryRequestAndFullUrl",
"variable" : [
"drugObs",
"drugEntry"
]
}
]
}
]
}
]
},
{
"name" : "physicalentries",
"source" : [
{
"context" : "lifestyle",
"element" : "activitePhysique",
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"source" : [
{
"context" : "adminId"
}
],
"target" : [
{
"context" : "identifier",
"contextType" : "variable",
"element" : "value",
"transform" : "copy",
"parameter" : [
{
"valueId" : "adminId"
}
]
}
]
}
]
},
{
"name" : "adminstatus",
"source" : [
{
"context" : "src"
}
],
"target" : [
{
"context" : "tgtMedAdmin",
"contextType" : "variable",
"element" : "status",
"transform" : "copy",
"parameter" : [
{
"valueString" : "completed"
}
]
}
]
},
{
"name" : "adminsubject",
"source" : [
{
"context" : "src"
}
],
"target" : [
{
"context" : "tgtMedAdmin",
"contextType" : "variable",
"element" : "subject",
"variable" : "ref",
"transform" : "create",
"parameter" : [
{
"valueString" : "Reference"
}
]
}
],
"rule" : [
{
"name" : "subjectref",
"source" : [
{
"context" : "patient",
"element" : "id",
"variable" : "patientId"
}
],
"target" : [
{
"context" : "ref",
"contextType" : "variable",
"element" : "reference",
"transform" : "evaluate",
"parameter" : [
{
"valueString" : "'Patient/' + %patientId"
}
]
},
{
"context" : "ref",
"contextType" : "variable",
"element" : "type",
"transform" : "copy",
"parameter" : [
{
"valueString" : "Patient"
}
]
}
]
}
]
},
{
"name" : "adminmedication",
"source" : [
{
"context" : "src",
"element" : "denomination",
"variable" : "denomination"
}
],
"target" : [
{
"context" : "tgtMedAdmin",
"contextType" : "variable",
"element" : "medication",
"variable" : "medication",
"transform" : "create",
"parameter" : [
{
"valueString" : "CodeableConcept"
}
]
}
],
"rule" : [
{
"name" : "medicationtext",
"source" : [
{
"context" : "denomination"
}
],
"target" : [
{
"context" : "medication",
"contextType" : "variable",
"element" : "text",
"transform" : "copy",
"parameter" : [
{
"valueId" : "denomination"
}
]
}
]
},
{
"name" : "atccoding",
"source" : [
{
"context" : "src",
"element" : "codeAtc",
"variable" : "atc"
}
],
"target" : [
{
"context" : "medication",
"contextType" : "variable",
"element" : "coding",
"variable" : "coding"
}
],
"rule" : [
{
"name" : "atcsystem",
"source" : [
{
"context" : "atc"
}
],
"target" : [
{
"context" : "coding",
"contextType" : "variable",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "http://www.whocc.no/atc"
}
]
}
]
},
{
"name" : "atccode",
"source" : [
{
"context" : "atc"
}
],
"target" : [
{
"context" : "coding",
"contextType" : "variable",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueId" : "atc"
}
]
}
]
}
]
}
]
},
{
"name" : "admineffective",
"source" : [
{
"context" : "src",
"condition" : "src.dateHeureDebut.exists() or src.dateHeureFin.exists()"
}
],
"target" : [
{
"context" : "tgtMedAdmin",
"contextType" : "variable",
"element" : "effective",
"variable" : "period",
"transform" : "create",
"parameter" : [
{
"valueString" : "Period"
}
]
}
],
"rule" : [
{
"name" : "periodstart",
"source" : [
{
"context" : "src",
"element" : "dateHeureDebut",
"variable" : "startDate"
}
],
"target" : [
{
"context" : "period",
"contextType" : "variable",
"element" : "start",
"transform" : "copy",
"parameter" : [
{
"valueId" : "startDate"
}
]
}
]
},
{
"name" : "periodend",
"source" : [
{
"context" : "src",
"element" : "dateHeureFin",
"variable" : "endDate"
}
],
"target" : [
{
"context" : "period",
"contextType" : "variable",
"element" : "end",
"transform" : "copy",
"parameter" : [
{
"valueId" : "endDate"
}
]
}
]
}
]
},
{
"name" : "admindosage",
"source" : [
{
"context" : "src",
"condition" : "src.quantite.exists() or src.voieAdministration.exists()"
}
],
"target" : [
{
"context" : "tgtMedAdmin",
"contextType" : "variable",
"element" : "dosage",
"variable" : "dosage"
}
],
"rule" : [
{
"name" : "admindose",
"source" : [
{
"context" : "src",
"element" : "quantite",
"variable" : "quantity"
}
],
"target" : [
{
"context" : "dosage",
"contextType" : "variable",
"element" : "dose",
"variable" : "dose",
"transform" : "create",
"parameter" : [
{
"valueString" : "Quantity"
}
]
}
],
"rule" : [
{
"name" : "dosevalue",
"source" : [
{
"context" : "quantity"
}
],
"target" : [
{
"context" : "dose",
"contextType" : "variable",
"element" : "value",
"transform" : "copy",
"parameter" : [
{
"valueId" : "quantity"
}
]
}
]
},
{
"name" : "doseunit",
"source" : [
{
"context" : "src",
"element" : "uniteQuantite",
"variable" : "unit"
}
],
"target" : [
{
"context" : "dose",
"contextType" : "variable",
"element" : "unit",
"transform" : "copy",
"parameter" : [
{
"valueId" : "unit"
}
]
}
]
}
]
},
{
"name" : "dosageroute",
"source" : [
{
"context" : "src",
"element" : "voieAdministration",
"variable" : "route"
}
],
"target" : [
{
"context" : "dosage",
"contextType" : "variable",
"element" : "route",
"variable" : "routeCC"
}
],
"rule" : [
{
"name" : "routecoding",
"source" : [
{
"context" : "route"
}
],
"target" : [
{
"context" : "routeCC",
"contextType" : "variable",
"element" : "coding",
"variable" : "routeCoding"
}
],
"rule" : [
{
"name" : "routecode",
"source" : [
{
"context" : "route"
}
],
"target" : [
{
"context" : "routeCoding",
"contextType" : "variable",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueId" : "route"
}
]
}
]
},
{
"name" : "routesystem",
"source" : [
{
"context" : "route"
}
],
"target" : [
{
"context" : "routeCoding",
"contextType" : "variable",
"element" : "system",
"transform" : "copy",
"parameter" : [
{
"valueString" : "https://smt.esante.gouv.fr/terminologie-standardterms"
}
]
}
]
}
]
}
]
}
]
}
]
},
{
"name" : "TransformMedicationAdministrationWOrder",
"extends" : "TransformMedicationAdministrationWOOrder",
"typeMode" : "none",
"input" : [
{
"name" : "src",
"mode" : "source"
},
{
"name" : "tgtMedAdmin",
"type" : "MedicationAdministration",
"mode" : "target"
},
{
"name" : "patient",
"mode" : "source"
},
{
"name" : "order",
"mode" : "source"
}
],
"rule" : [
{
"name" : "admincontext",
"source" : [
{
"context" : "src"
}
],
"target" : [
{
"context" : "tgtMedAdmin",
"contextType" : "variable",
"element" : "request",
"variable" : "ref",
"transform" : "create",
"parameter" : [
{
"valueString" : "Reference"
}
]
}
],
"rule" : [
{
"name" : "encounterref",
"source" : [
{
"context" : "order",
"element" : "id",
"variable" : "orderId"
}
],
"target" : [
{
"context" : "ref",
"contextType" : "variable",
"element" : "reference",
"transform" : "evaluate",
"parameter" : [
{
"valueString" : "'MedicationRequest/' + %orderId"
}
]
},
{
"context" : "ref",
"contextType" : "variable",
"element" : "type",
"transform" : "copy",
"parameter" : [
{
"valueString" : "MedicationRequest"
}
]
}
]
}
]
}
]
},
{
"name" : "setEntryRequestAndFullUrl",
"typeMode" : "none",
"input" : [
{
"name" : "newRes",
"mode" : "source"
},
{
"name" : "tgtEntry",
"mode" : "target"
}
],
"rule" : [
{
"name" : "setResourceType",
"source" : [
{
"context" : "newRes",
"element" : "id",
"variable" : "newResId"
}
],
"rule" : [
{
"name" : "setFullUrl",
"source" : [
{
"context" : "newResId"
}
],
"target" : [
{
"context" : "tgtEntry",
"contextType" : "variable",
"element" : "fullUrl",
"transform" : "evaluate",
"parameter" : [
{
"valueString" : "'urn:ehr:' + %newRes.type().name + '/' + %newResId"
}
]
}
]
}
]
}
]
}
]
}
IG © 2023+ AP-HP. Package aphp.fhir.fr.dm#0.1.0 based on FHIR 4.0.1. Generated 2025-10-23
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