Data Management with FHIR
0.1.0 - ci-build
Data Management with FHIR
0.1.0 - ci-build
Data Management with FHIR - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions
| Draft as of 2025-10-23 |
{
"resourceType" : "StructureMap",
"id" : "CoreFHIRPatient2OMOP",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Narratif généré : StructureMap CoreFHIRPatient2OMOP</b></p><a name=\"CoreFHIRPatient2OMOP\"> </a><a name=\"hcCoreFHIRPatient2OMOP\"> </a><pre class=\"fml\">\r\n<b>map</b><span style=\"color: navy\"> "</span>https://interop.aphp.fr/ig/fhir/dm/StructureMap/CoreFHIRPatient2OMOP<span style=\"color: navy\">" = "</span>CoreFHIRPatient2OMOP<span style=\"color: navy\">"\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Cette ressource présente les spécifications de l''alignement entre la ressource `Patient` vers les tables correspodantes du CDM OMOP.</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"http://hl7.org/fhir/R4/patient.html\" title=\"Patient\">http://hl7.org/fhir/StructureDefinition/Patient</a><span style=\"color: navy\">" </span><b>alias </b>Patient <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"StructureDefinition-LogicalBundle.html\" title=\"LogicalBundle\">https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/LogicalBundle</a><span style=\"color: navy\">" </span><b>alias </b>LogicalBundle <b>as </b><b>target</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"StructureDefinition-OMOPPerson.html\" title=\"Person OMOP Table\">https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPPerson</a><span style=\"color: navy\">" </span><b>alias </b>PersonTable <b>as </b><b>target</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"StructureDefinition-OMOPLocation.html\" title=\"Location OMOP Table\">https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPLocation</a><span style=\"color: navy\">" </span><b>alias </b>LocationTable <b>as </b><b>target</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span><a href=\"StructureDefinition-OMOPDeath.html\" title=\"Death OMOP Table\">https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPDeath</a><span style=\"color: navy\">" </span><b>alias </b>DeathTable <b>as </b><b>target</b>\r\n\r\n<b>imports</b><span style=\"color: navy\"> "</span><a href=\"StructureMap-CoreFHIR2OMOPPerson.html\" title=\"Mapping FHIR Patient resource to OMOP Person\">https://interop.aphp.fr/ig/fhir/dm/StructureMap/CoreFHIR2OMOPPerson</a><span style=\"color: navy\">"\r\n</span><b>imports</b><span style=\"color: navy\"> "</span><a href=\"StructureMap-CoreFHIR2OMOPLocation.html\" title=\"Mapping Patient resource to Location OMOP Domain\">https://interop.aphp.fr/ig/fhir/dm/StructureMap/CoreFHIR2OMOPLocation</a><span style=\"color: navy\">"\r\n</span><b>imports</b><span style=\"color: navy\"> "</span><a href=\"StructureMap-CoreFHIR2OMOPDeath.html\" title=\"Mapping FHIR Patient resource to OMOP Death\">https://interop.aphp.fr/ig/fhir/dm/StructureMap/CoreFHIR2OMOPDeath</a><span style=\"color: navy\">"\r\n</span>\r\n<b>group </b>Patient<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>Patient, <b>target</b> <span style=\"color: maroon\">tgtBundle</span><span style=\"color: navy\"> : </span>LogicalBundle<span style=\"color: navy\">)</span><b> <<types>></b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>tgtBundle.entry<b> as </b><span style=\"color: maroon\">newEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<span style=\"color: navy\"><b> -> </b></span>newEntry.person = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'PersonTable'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">newPerson</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<b> then </b>Person<span style=\"color: navy\">(</span><span style=\"color: maroon\">src</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">newPerson</span><span style=\"color: navy\">)</span> <i>"transformPerson"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createPerson"</i><span style=\"color: navy\">;</span>\r\n src.address<b> as </b><span style=\"color: maroon\">srcAddress</span><b> where </b>(use = 'home') and period.end.empty()<span style=\"color: navy\"><b> -> </b></span>newEntry.location = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'LocationTable'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">newLocation</span><b> then</b><span style=\"color: navy\"> {\r\n</span> srcAddress<b> then </b>Location<span style=\"color: navy\">(</span><span style=\"color: maroon\">srcAddress</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">newLocation</span><span style=\"color: navy\">)</span> <i>"transformLocation"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createLocation"</i><span style=\"color: navy\">;</span>\r\n src<b> where </b>deceased.is(System.DateTime) or deceased.is(System.Boolean)<span style=\"color: navy\"><b> -> </b></span>newEntry.death = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'DeathTable'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">newDeath</span><b> then</b><span style=\"color: navy\"> {\r\n</span> src<b> then </b>Death<span style=\"color: navy\">(</span><span style=\"color: maroon\">src</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">newDeath</span><span style=\"color: navy\">)</span> <i>"transformDeath"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"createDeath"</i><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span> <i>"newEntry"</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
},
"url" : "https://interop.aphp.fr/ig/fhir/dm/StructureMap/CoreFHIRPatient2OMOP",
"version" : "0.1.0",
"name" : "CoreFHIRPatient2OMOP",
"title" : "Cette ressource présente les spécifications de l''alignement entre la ressource `Patient` vers les tables correspodantes du CDM OMOP.",
"status" : "draft",
"date" : "2025-10-23T20:49:03+00:00",
"publisher" : "AP-HP",
"contact" : [
{
"name" : "AP-HP",
"telecom" : [
{
"system" : "url",
"value" : "https://aphp.fr"
}
]
}
],
"description" : "Cette ressource présente les spécifications de l''alignement entre la ressource `Patient` vers les tables correspodantes du CDM OMOP.",
"jurisdiction" : [
{
"coding" : [
{
"system" : "urn:iso:std:iso:3166",
"code" : "FR",
"display" : "France"
}
]
}
],
"structure" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/Patient",
"mode" : "source",
"alias" : "Patient"
},
{
"url" : "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/LogicalBundle",
"mode" : "target",
"alias" : "LogicalBundle"
},
{
"url" : "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPPerson",
"mode" : "target",
"alias" : "PersonTable"
},
{
"url" : "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPLocation",
"mode" : "target",
"alias" : "LocationTable"
},
{
"url" : "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPDeath",
"mode" : "target",
"alias" : "DeathTable"
}
],
"import" : [
🔗 "https://interop.aphp.fr/ig/fhir/dm/StructureMap/CoreFHIR2OMOPPerson"🔗 ,
"https://interop.aphp.fr/ig/fhir/dm/StructureMap/CoreFHIR2OMOPLocation"🔗 ,
"https://interop.aphp.fr/ig/fhir/dm/StructureMap/CoreFHIR2OMOPDeath"
],
"group" : [
{
"name" : "Patient",
"typeMode" : "types",
"input" : [
{
"name" : "src",
"type" : "Patient",
"mode" : "source"
},
{
"name" : "tgtBundle",
"type" : "LogicalBundle",
"mode" : "target"
}
],
"rule" : [
{
"name" : "newEntry",
"source" : [
{
"context" : "src"
}
],
"target" : [
{
"context" : "tgtBundle",
"contextType" : "variable",
"element" : "entry",
"variable" : "newEntry"
}
],
"rule" : [
{
"name" : "createPerson",
"source" : [
{
"context" : "src"
}
],
"target" : [
{
"context" : "newEntry",
"contextType" : "variable",
"element" : "person",
"variable" : "newPerson",
"transform" : "create",
"parameter" : [
{
"valueString" : "PersonTable"
}
]
}
],
"rule" : [
{
"name" : "transformPerson",
"source" : [
{
"context" : "src"
}
],
"dependent" : [
{
"name" : "Person",
"variable" : [
"src",
"newPerson"
]
}
]
}
]
},
{
"name" : "createLocation",
"source" : [
{
"context" : "src",
"element" : "address",
"variable" : "srcAddress",
"condition" : "(use = 'home') and period.end.empty()"
}
],
"target" : [
{
"context" : "newEntry",
"contextType" : "variable",
"element" : "location",
"variable" : "newLocation",
"transform" : "create",
"parameter" : [
{
"valueString" : "LocationTable"
}
]
}
],
"rule" : [
{
"name" : "transformLocation",
"source" : [
{
"context" : "srcAddress"
}
],
"dependent" : [
{
"name" : "Location",
"variable" : [
"srcAddress",
"newLocation"
]
}
]
}
]
},
{
"name" : "createDeath",
"source" : [
{
"context" : "src",
"condition" : "deceased.is(System.DateTime) or deceased.is(System.Boolean)"
}
],
"target" : [
{
"context" : "newEntry",
"contextType" : "variable",
"element" : "death",
"variable" : "newDeath",
"transform" : "create",
"parameter" : [
{
"valueString" : "DeathTable"
}
]
}
],
"rule" : [
{
"name" : "transformDeath",
"source" : [
{
"context" : "src"
}
],
"dependent" : [
{
"name" : "Death",
"variable" : [
"src",
"newDeath"
]
}
]
}
]
}
]
}
]
}
]
}
IG © 2023+ AP-HP. Package aphp.fhir.fr.dm#0.1.0 based on FHIR 4.0.1. Generated 2025-10-23
Links: Table of Contents |
QA Report
| New Issue
| 