Data Management with FHIR
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: Cette ressource présente les spécifications de l''alignement entre les ressources FHIR vers les tables correspodantes du CDM OMOP. - JSON Representation

Draft as of 2025-10-23

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{
  "resourceType" : "StructureMap",
  "id" : "CoreFHIR2OMOP",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Narratif généré : StructureMap CoreFHIR2OMOP</b></p><a name=\"CoreFHIR2OMOP\"> </a><a name=\"hcCoreFHIR2OMOP\"> </a><pre class=\"fml\">\r\n<b>map</b><span style=\"color: navy\"> &quot;</span>https://interop.aphp.fr/ig/fhir/dm/StructureMap/CoreFHIR2OMOP<span style=\"color: navy\">&quot; = &quot;</span>CoreFHIR2OMOP<span style=\"color: navy\">&quot;\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Cette ressource présente les spécifications de l''alignement entre les ressources FHIR vers les tables correspodantes du CDM OMOP.</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span><a href=\"http://hl7.org/fhir/R4/bundle.html\" title=\"Bundle\">http://hl7.org/fhir/StructureDefinition/Bundle</a><span style=\"color: navy\">&quot; </span><b>alias </b>Bundle <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span><a href=\"http://hl7.org/fhir/R4/patient.html\" title=\"Patient\">http://hl7.org/fhir/StructureDefinition/Patient</a><span style=\"color: navy\">&quot; </span><b>alias </b>Patient <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span><a href=\"StructureDefinition-LogicalBundle.html\" title=\"LogicalBundle\">https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/LogicalBundle</a><span style=\"color: navy\">&quot; </span><b>alias </b>LogicalBundle <b>as </b><b>target</b>\r\n\r\n<b>imports</b><span style=\"color: navy\"> &quot;</span><a href=\"StructureMap-CoreFHIRPatient2OMOP.html\" title=\"Cette ressource présente les spécifications de l''alignement entre la ressource `Patient` vers les tables correspodantes du CDM OMOP.\">https://interop.aphp.fr/ig/fhir/dm/StructureMap/CoreFHIRPatient2OMOP</a><span style=\"color: navy\">&quot;\r\n</span>\r\n<b>group </b>Bundle<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>Bundle, <b>target</b> <span style=\"color: maroon\">tgtBundle</span><span style=\"color: navy\"> : </span>LogicalBundle<span style=\"color: navy\">)</span><b> &lt;&lt;types&gt;&gt;</b><span style=\"color: navy\"> {\r\n</span>  src<span style=\"color: navy\"><b> -&gt; </b></span>tgtBundle.logicalId = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;setId&quot;</i><span style=\"color: navy\">;</span>\r\n  src<span style=\"color: navy\"><b> -&gt; </b></span>tgtBundle.type = <span style=\"color: blue\">'transaction'</span> <i>&quot;setType&quot;</i><span style=\"color: navy\">;</span>\r\n  src.entry<b> as </b><span style=\"color: maroon\">srcEntry</span><b> where </b>srcEntry.resource.is(FHIR.Patient)<b> then</b><span style=\"color: navy\"> {\r\n</span>    srcEntry.resource<b> as </b><span style=\"color: maroon\">srcResource</span><span style=\"color: navy\"><b> -&gt; </b></span><span style=\"color: navy\">(</span>%srcResource.as(FHIR.Patient)<span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">srcPatient</span><b> then </b>Patient<span style=\"color: navy\">(</span><span style=\"color: maroon\">srcPatient</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">tgtBundle</span><span style=\"color: navy\">)</span> <i>&quot;addPatient&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;entryLoop4Patient&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
  },
  "url" : "https://interop.aphp.fr/ig/fhir/dm/StructureMap/CoreFHIR2OMOP",
  "version" : "0.1.0",
  "name" : "CoreFHIR2OMOP",
  "title" : "Cette ressource présente les spécifications de l''alignement entre les ressources FHIR vers les tables correspodantes du CDM OMOP.",
  "status" : "draft",
  "date" : "2025-10-23T20:49:03+00:00",
  "publisher" : "AP-HP",
  "contact" : [
    {
      "name" : "AP-HP",
      "telecom" : [
        {
          "system" : "url",
          "value" : "https://aphp.fr"
        }
      ]
    }
  ],
  "description" : "Cette ressource présente les spécifications de l''alignement entre les ressources FHIR vers les tables correspodantes du CDM OMOP.",
  "jurisdiction" : [
    {
      "coding" : [
        {
          "system" : "urn:iso:std:iso:3166",
          "code" : "FR",
          "display" : "France"
        }
      ]
    }
  ],
  "structure" : [
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/Bundle",
      "mode" : "source",
      "alias" : "Bundle"
    },
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/Patient",
      "mode" : "source",
      "alias" : "Patient"
    },
    {
      "url" : "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/LogicalBundle",
      "mode" : "target",
      "alias" : "LogicalBundle"
    }
  ],
  "import" : [
    🔗 "https://interop.aphp.fr/ig/fhir/dm/StructureMap/CoreFHIRPatient2OMOP"
  ],
  "group" : [
    {
      "name" : "Bundle",
      "typeMode" : "types",
      "input" : [
        {
          "name" : "src",
          "type" : "Bundle",
          "mode" : "source"
        },
        {
          "name" : "tgtBundle",
          "type" : "LogicalBundle",
          "mode" : "target"
        }
      ],
      "rule" : [
        {
          "name" : "setId",
          "source" : [
            {
              "context" : "src"
            }
          ],
          "target" : [
            {
              "context" : "tgtBundle",
              "contextType" : "variable",
              "element" : "logicalId",
              "transform" : "uuid"
            }
          ]
        },
        {
          "name" : "setType",
          "source" : [
            {
              "context" : "src"
            }
          ],
          "target" : [
            {
              "context" : "tgtBundle",
              "contextType" : "variable",
              "element" : "type",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueString" : "transaction"
                }
              ]
            }
          ]
        },
        {
          "name" : "entryLoop4Patient",
          "source" : [
            {
              "context" : "src",
              "element" : "entry",
              "variable" : "srcEntry",
              "condition" : "srcEntry.resource.is(FHIR.Patient)"
            }
          ],
          "rule" : [
            {
              "name" : "addPatient",
              "source" : [
                {
                  "context" : "srcEntry",
                  "element" : "resource",
                  "variable" : "srcResource"
                }
              ],
              "target" : [
                {
                  "contextType" : "variable",
                  "variable" : "srcPatient",
                  "transform" : "evaluate",
                  "parameter" : [
                    {
                      "valueString" : "%srcResource.as(FHIR.Patient)"
                    }
                  ]
                }
              ],
              "dependent" : [
                {
                  "name" : "Patient",
                  "variable" : [
                    "srcPatient",
                    "tgtBundle"
                  ]
                }
              ]
            }
          ]
        }
      ]
    }
  ]
}