Data Management with FHIR
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Logical Model: Specimen OMOP Table

Official URL: https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPSpecimen Version: 0.1.0
Draft as of 2025-10-23 Computable Name: OMOPSpecimen

The specimen domain contains the records identifying biological samples from a person.

Usages:

  • This Logical Model is not used by any profiles in this Implementation Guide

You can also check for usages in the FHIR IG Statistics

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

NomDrapeauxCard.TypeDescription et contraintes    Filter: Filtersdoco
.. OMOPSpecimen 0..* Base Specimen OMOP Table
Instances of this logical model can be the target of a Reference
... specimen_id 1..1 integer Specimen Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... specimen_concept_id 1..1 Reference(Concept OMOP Table) Specimen
... specimen_date 1..1 date Specimen Date
... specimen_datetime 0..1 dateTime Specimen Datetime
... quantity 0..1 integer Quantity
... unit_concept_id 0..1 Reference(Concept OMOP Table) Unit
... anatomic_site_concept_id 0..1 Reference(Concept OMOP Table) Anatomic Site
... disease_status_concept_id 0..1 Reference(Concept OMOP Table) Disease Status
... specimen_source_id 0..1 string Specimen Source
... specimen_source_value 0..1 string Specimen Source Value
... unit_source_value 0..1 string Unit Source Value
... anatomic_site_source_value 0..1 string Anatomic Site Source Value
... disease_status_source_value 0..1 string Disease Site Source Value

doco Documentation for this format

This structure is derived from Base

NomDrapeauxCard.TypeDescription et contraintes    Filter: Filtersdoco
.. OMOPSpecimen 0..* Base Specimen OMOP Table
Instances of this logical model can be the target of a Reference
... specimen_id 1..1 integer Specimen Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... specimen_concept_id 1..1 Reference(Concept OMOP Table) Specimen
... specimen_date 1..1 date Specimen Date
... specimen_datetime 0..1 dateTime Specimen Datetime
... quantity 0..1 integer Quantity
... unit_concept_id 0..1 Reference(Concept OMOP Table) Unit
... anatomic_site_concept_id 0..1 Reference(Concept OMOP Table) Anatomic Site
... disease_status_concept_id 0..1 Reference(Concept OMOP Table) Disease Status
... specimen_source_id 0..1 string Specimen Source
... specimen_source_value 0..1 string Specimen Source Value
... unit_source_value 0..1 string Unit Source Value
... anatomic_site_source_value 0..1 string Anatomic Site Source Value
... disease_status_source_value 0..1 string Disease Site Source Value

doco Documentation for this format
NomDrapeauxCard.TypeDescription et contraintes    Filter: Filtersdoco
.. OMOPSpecimen 0..* Base Specimen OMOP Table
Instances of this logical model can be the target of a Reference
... specimen_id 1..1 integer Specimen Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... specimen_concept_id 1..1 Reference(Concept OMOP Table) Specimen
... specimen_date 1..1 date Specimen Date
... specimen_datetime 0..1 dateTime Specimen Datetime
... quantity 0..1 integer Quantity
... unit_concept_id 0..1 Reference(Concept OMOP Table) Unit
... anatomic_site_concept_id 0..1 Reference(Concept OMOP Table) Anatomic Site
... disease_status_concept_id 0..1 Reference(Concept OMOP Table) Disease Status
... specimen_source_id 0..1 string Specimen Source
... specimen_source_value 0..1 string Specimen Source Value
... unit_source_value 0..1 string Unit Source Value
... anatomic_site_source_value 0..1 string Anatomic Site Source Value
... disease_status_source_value 0..1 string Disease Site Source Value

doco Documentation for this format

This structure is derived from Base

Résumé

Mandatory: 0 element(5 nested mandatory elements)

Structures

This structure refers to these other structures:

Key Elements View

NomDrapeauxCard.TypeDescription et contraintes    Filter: Filtersdoco
.. OMOPSpecimen 0..* Base Specimen OMOP Table
Instances of this logical model can be the target of a Reference
... specimen_id 1..1 integer Specimen Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... specimen_concept_id 1..1 Reference(Concept OMOP Table) Specimen
... specimen_date 1..1 date Specimen Date
... specimen_datetime 0..1 dateTime Specimen Datetime
... quantity 0..1 integer Quantity
... unit_concept_id 0..1 Reference(Concept OMOP Table) Unit
... anatomic_site_concept_id 0..1 Reference(Concept OMOP Table) Anatomic Site
... disease_status_concept_id 0..1 Reference(Concept OMOP Table) Disease Status
... specimen_source_id 0..1 string Specimen Source
... specimen_source_value 0..1 string Specimen Source Value
... unit_source_value 0..1 string Unit Source Value
... anatomic_site_source_value 0..1 string Anatomic Site Source Value
... disease_status_source_value 0..1 string Disease Site Source Value

doco Documentation for this format

Differential View

This structure is derived from Base

NomDrapeauxCard.TypeDescription et contraintes    Filter: Filtersdoco
.. OMOPSpecimen 0..* Base Specimen OMOP Table
Instances of this logical model can be the target of a Reference
... specimen_id 1..1 integer Specimen Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... specimen_concept_id 1..1 Reference(Concept OMOP Table) Specimen
... specimen_date 1..1 date Specimen Date
... specimen_datetime 0..1 dateTime Specimen Datetime
... quantity 0..1 integer Quantity
... unit_concept_id 0..1 Reference(Concept OMOP Table) Unit
... anatomic_site_concept_id 0..1 Reference(Concept OMOP Table) Anatomic Site
... disease_status_concept_id 0..1 Reference(Concept OMOP Table) Disease Status
... specimen_source_id 0..1 string Specimen Source
... specimen_source_value 0..1 string Specimen Source Value
... unit_source_value 0..1 string Unit Source Value
... anatomic_site_source_value 0..1 string Anatomic Site Source Value
... disease_status_source_value 0..1 string Disease Site Source Value

doco Documentation for this format

Snapshot View

NomDrapeauxCard.TypeDescription et contraintes    Filter: Filtersdoco
.. OMOPSpecimen 0..* Base Specimen OMOP Table
Instances of this logical model can be the target of a Reference
... specimen_id 1..1 integer Specimen Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... specimen_concept_id 1..1 Reference(Concept OMOP Table) Specimen
... specimen_date 1..1 date Specimen Date
... specimen_datetime 0..1 dateTime Specimen Datetime
... quantity 0..1 integer Quantity
... unit_concept_id 0..1 Reference(Concept OMOP Table) Unit
... anatomic_site_concept_id 0..1 Reference(Concept OMOP Table) Anatomic Site
... disease_status_concept_id 0..1 Reference(Concept OMOP Table) Disease Status
... specimen_source_id 0..1 string Specimen Source
... specimen_source_value 0..1 string Specimen Source Value
... unit_source_value 0..1 string Unit Source Value
... anatomic_site_source_value 0..1 string Anatomic Site Source Value
... disease_status_source_value 0..1 string Disease Site Source Value

doco Documentation for this format

This structure is derived from Base

Résumé

Mandatory: 0 element(5 nested mandatory elements)

Structures

This structure refers to these other structures:

 

Other representations of profile: CSV, Excel