Guide d'implémentation du GT Standards et Interopérabilité pour les EDS
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: Mapping Patient resource to Person OMOP Domain - XML Representation

Draft as of 2024-11-23

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<StructureMap xmlns="http://hl7.org/fhir">
  <id value="Person"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: StructureMap Person</b></p><a name="Person"> </a><a name="hcPerson"> </a><a name="Person-fr-FR"> </a><pre class="fml">
<b>map</b><span style="color: navy"> &quot;</span>https://interop.esante.gouv.fr/ig/fhir/eds/StructureMap/Person<span style="color: navy">&quot; = &quot;</span>Person<span style="color: navy">&quot;

</span><span style="color: navy">// </span><span style="color: green">Mapping Patient resource to Person OMOP Domain</span>

<b>uses</b><span style="color: navy"> &quot;</span><a href="http://hl7.org/fhir/R4/patient.html" title="Patient">http://hl7.org/fhir/StructureDefinition/Patient</a><span style="color: navy">&quot; </span><b>alias </b>Patient <b>as </b><b>source</b>
<b>uses</b><span style="color: navy"> &quot;</span><a href="StructureDefinition-OMOPPerson.html" title="Person OMOP Table">https://interop.esante.gouv.fr/ig/fhir/eds/StructureDefinition/OMOPPerson</a><span style="color: navy">&quot; </span><b>alias </b>PersonTable <b>as </b><b>target</b>

<b>group </b>Person<span style="color: navy">(</span><b>source</b> <span style="color: maroon">src</span><span style="color: navy"> : </span>Patient, <b>target</b> <span style="color: maroon">tgt</span><span style="color: navy"> : </span>PersonTable<span style="color: navy">)</span><span style="color: navy"> {
</span>  src.id<b> as </b><span style="color: maroon">srcId</span><span style="color: navy"><b> -&gt; </b></span>tgt.person_source_value = <span style="color: maroon">srcId</span><span style="color: navy">;</span>
  src.gender<b> as </b><span style="color: maroon">srcGender</span><b> then</b><span style="color: navy"> {
</span>    srcGender<span style="color: navy"><b> -&gt; </b></span>tgt.gender_concept_id = <b>create</b><span style="color: navy">(</span><span style="color: blue">'Reference'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">tgtReference</span><b> then</b><span style="color: navy"> {
</span>      srcGender<span style="color: navy"><b> -&gt; </b></span> <b>translate</b><span style="color: navy">(</span><span style="color: maroon">srcGender</span><span style="color: navy">, </span><span style="color: blue">'https://interop.esante.gouv.fr/ig/fhir/eds/ConceptMap/hl7Gender2OhdsiGender'</span><span style="color: navy">, </span><span style="color: blue">'code'</span><span style="color: navy">)</span><b> as </b><span style="color: maroon">genderCode</span><span style="color: navy">, </span> tgtReference.reference = <b>append</b><span style="color: navy">(</span><span style="color: blue">'Concept/'</span><span style="color: navy">, </span><span style="color: maroon">genderCode</span><span style="color: navy">)</span> <i>&quot;ref&quot;</i><span style="color: navy">;</span>
    <span style="color: navy">}</span> <i>&quot;refConcept&quot;</i><span style="color: navy">;</span>
    srcGender<span style="color: navy"><b> -&gt; </b></span>tgt.gender_source_value = <span style="color: maroon">srcGender</span> <i>&quot;sourceGender&quot;</i><span style="color: navy">;</span>
  <span style="color: navy">}</span><span style="color: navy">;</span>
  src.birthDate<b> as </b><span style="color: maroon">srcBirthDate</span><b> then</b><span style="color: navy"> {
</span>    srcBirthDate<span style="color: navy"><b> -&gt; </b></span>tgt.birth_datetime = <span style="color: maroon">srcBirthDate</span> <i>&quot;dateTime&quot;</i><span style="color: navy">;</span>
    srcBirthDate<span style="color: navy"><b> -&gt; </b></span>tgt.year_of_birth = <span style="color: navy">(</span>%srcBirthDate.toString().substring(0, 4).toInteger()<span style="color: navy">)</span> <i>&quot;year&quot;</i><span style="color: navy">;</span>
    srcBirthDate<span style="color: navy"><b> -&gt; </b></span>tgt.month_of_birth = <span style="color: navy">(</span>%srcBirthDate.toString().substring(5, 2).toInteger()<span style="color: navy">)</span> <i>&quot;month&quot;</i><span style="color: navy">;</span>
    srcBirthDate<span style="color: navy"><b> -&gt; </b></span>tgt.day_of_birth = <span style="color: navy">(</span>%srcBirthDate.toString().substring(8, 2).toInteger()<span style="color: navy">)</span> <i>&quot;day&quot;</i><span style="color: navy">;</span>
  <span style="color: navy">}</span><span style="color: navy">;</span>
<span style="color: navy">}

</span></pre></div>
  </text>
  <url
       value="https://interop.esante.gouv.fr/ig/fhir/eds/StructureMap/Person"/>
  <version value="0.1.0"/>
  <name value="Person"/>
  <title value="Mapping Patient resource to Person OMOP Domain"/>
  <status value="draft"/>
  <date value="2024-11-23T19:10:09+00:00"/>
  <publisher value="ANS"/>
  <contact>
    <name value="ANS"/>
    <telecom>
      <system value="url"/>
      <value value="https://esante.gouv.fr"/>
    </telecom>
  </contact>
  <description value="Mapping Patient resource to Person OMOP Domain"/>
  <jurisdiction>
    <coding>
      <system value="urn:iso:std:iso:3166"/>
      <code value="FR"/>
      <display value="France"/>
    </coding>
  </jurisdiction>
  <structure>
    <url value="http://hl7.org/fhir/StructureDefinition/Patient"/>
    <mode value="source"/>
    <alias value="Patient"/>
  </structure>
  <structure>
    <url
         value="https://interop.esante.gouv.fr/ig/fhir/eds/StructureDefinition/OMOPPerson"/>
    <mode value="target"/>
    <alias value="PersonTable"/>
  </structure>
  <group>
    <name value="Person"/>
    <typeMode value="none"/>
    <input>
      <name value="src"/>
      <type value="Patient"/>
      <mode value="source"/>
    </input>
    <input>
      <name value="tgt"/>
      <type value="PersonTable"/>
      <mode value="target"/>
    </input>
    <rule>
      <name value="id"/>
      <source>
        <context value="src"/>
        <element value="id"/>
        <variable value="srcId"/>
      </source>
      <target>
        <context value="tgt"/>
        <contextType value="variable"/>
        <element value="person_source_value"/>
        <transform value="copy"/>
        <parameter>
          <valueId value="srcId"/>
        </parameter>
      </target>
    </rule>
    <rule>
      <name value="gender"/>
      <source>
        <context value="src"/>
        <element value="gender"/>
        <variable value="srcGender"/>
      </source>
      <rule>
        <name value="refConcept"/>
        <source>
          <context value="srcGender"/>
        </source>
        <target>
          <context value="tgt"/>
          <contextType value="variable"/>
          <element value="gender_concept_id"/>
          <variable value="tgtReference"/>
          <transform value="create"/>
          <parameter>
            <valueString value="Reference"/>
          </parameter>
        </target>
        <rule>
          <name value="ref"/>
          <source>
            <context value="srcGender"/>
          </source>
          <target>
            <contextType value="variable"/>
            <variable value="genderCode"/>
            <transform value="translate"/>
            <parameter>
              <valueId value="srcGender"/>
            </parameter>
            <parameter>
              <valueString
                           value="https://interop.esante.gouv.fr/ig/fhir/eds/ConceptMap/hl7Gender2OhdsiGender"/>
            </parameter>
            <parameter>
              <valueString value="code"/>
            </parameter>
          </target>
          <target>
            <context value="tgtReference"/>
            <contextType value="variable"/>
            <element value="reference"/>
            <transform value="append"/>
            <parameter>
              <valueString value="Concept/"/>
            </parameter>
            <parameter>
              <valueId value="genderCode"/>
            </parameter>
          </target>
        </rule>
      </rule>
      <rule>
        <name value="sourceGender"/>
        <source>
          <context value="srcGender"/>
        </source>
        <target>
          <context value="tgt"/>
          <contextType value="variable"/>
          <element value="gender_source_value"/>
          <transform value="copy"/>
          <parameter>
            <valueId value="srcGender"/>
          </parameter>
        </target>
      </rule>
    </rule>
    <rule>
      <name value="birthDate"/>
      <source>
        <context value="src"/>
        <element value="birthDate"/>
        <variable value="srcBirthDate"/>
      </source>
      <rule>
        <name value="dateTime"/>
        <source>
          <context value="srcBirthDate"/>
        </source>
        <target>
          <context value="tgt"/>
          <contextType value="variable"/>
          <element value="birth_datetime"/>
          <transform value="copy"/>
          <parameter>
            <valueId value="srcBirthDate"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="year"/>
        <source>
          <context value="srcBirthDate"/>
        </source>
        <target>
          <context value="tgt"/>
          <contextType value="variable"/>
          <element value="year_of_birth"/>
          <transform value="evaluate"/>
          <parameter>
            <valueString
                         value="%srcBirthDate.toString().substring(0, 4).toInteger()"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="month"/>
        <source>
          <context value="srcBirthDate"/>
        </source>
        <target>
          <context value="tgt"/>
          <contextType value="variable"/>
          <element value="month_of_birth"/>
          <transform value="evaluate"/>
          <parameter>
            <valueString
                         value="%srcBirthDate.toString().substring(5, 2).toInteger()"/>
          </parameter>
        </target>
      </rule>
      <rule>
        <name value="day"/>
        <source>
          <context value="srcBirthDate"/>
        </source>
        <target>
          <context value="tgt"/>
          <contextType value="variable"/>
          <element value="day_of_birth"/>
          <transform value="evaluate"/>
          <parameter>
            <valueString
                         value="%srcBirthDate.toString().substring(8, 2).toInteger()"/>
          </parameter>
        </target>
      </rule>
    </rule>
  </group>
</StructureMap>