Guide d'implémentation du GT Standards et Interopérabilité pour les EDS
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: Mapping Patient resource to Person OMOP Domain - TTL Representation

Draft as of 2024-11-23

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:StructureMap ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "Person"] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: StructureMap Person</b></p><a name=\"Person\"> </a><a name=\"hcPerson\"> </a><a name=\"Person-fr-FR\"> </a><pre class=\"fml\">\r\n<b>map</b><span style=\"color: navy\"> &quot;</span>https://interop.esante.gouv.fr/ig/fhir/eds/StructureMap/Person<span style=\"color: navy\">&quot; = &quot;</span>Person<span style=\"color: navy\">&quot;\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Mapping Patient resource to Person OMOP Domain</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span><a href=\"http://hl7.org/fhir/R4/patient.html\" title=\"Patient\">http://hl7.org/fhir/StructureDefinition/Patient</a><span style=\"color: navy\">&quot; </span><b>alias </b>Patient <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span><a href=\"StructureDefinition-OMOPPerson.html\" title=\"Person OMOP Table\">https://interop.esante.gouv.fr/ig/fhir/eds/StructureDefinition/OMOPPerson</a><span style=\"color: navy\">&quot; </span><b>alias </b>PersonTable <b>as </b><b>target</b>\r\n\r\n<b>group </b>Person<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>Patient, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>PersonTable<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  src.id<b> as </b><span style=\"color: maroon\">srcId</span><span style=\"color: navy\"><b> -&gt; </b></span>tgt.person_source_value = <span style=\"color: maroon\">srcId</span><span style=\"color: navy\">;</span>\r\n  src.gender<b> as </b><span style=\"color: maroon\">srcGender</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    srcGender<span style=\"color: navy\"><b> -&gt; </b></span>tgt.gender_concept_id = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Reference'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tgtReference</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      srcGender<span style=\"color: navy\"><b> -&gt; </b></span> <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">srcGender</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'https://interop.esante.gouv.fr/ig/fhir/eds/ConceptMap/hl7Gender2OhdsiGender'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">genderCode</span><span style=\"color: navy\">, </span> tgtReference.reference = <b>append</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Concept/'</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">genderCode</span><span style=\"color: navy\">)</span> <i>&quot;ref&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;refConcept&quot;</i><span style=\"color: navy\">;</span>\r\n    srcGender<span style=\"color: navy\"><b> -&gt; </b></span>tgt.gender_source_value = <span style=\"color: maroon\">srcGender</span> <i>&quot;sourceGender&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n  src.birthDate<b> as </b><span style=\"color: maroon\">srcBirthDate</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    srcBirthDate<span style=\"color: navy\"><b> -&gt; </b></span>tgt.birth_datetime = <span style=\"color: maroon\">srcBirthDate</span> <i>&quot;dateTime&quot;</i><span style=\"color: navy\">;</span>\r\n    srcBirthDate<span style=\"color: navy\"><b> -&gt; </b></span>tgt.year_of_birth = <span style=\"color: navy\">(</span>%srcBirthDate.toString().substring(0, 4).toInteger()<span style=\"color: navy\">)</span> <i>&quot;year&quot;</i><span style=\"color: navy\">;</span>\r\n    srcBirthDate<span style=\"color: navy\"><b> -&gt; </b></span>tgt.month_of_birth = <span style=\"color: navy\">(</span>%srcBirthDate.toString().substring(5, 2).toInteger()<span style=\"color: navy\">)</span> <i>&quot;month&quot;</i><span style=\"color: navy\">;</span>\r\n    srcBirthDate<span style=\"color: navy\"><b> -&gt; </b></span>tgt.day_of_birth = <span style=\"color: navy\">(</span>%srcBirthDate.toString().substring(8, 2).toInteger()<span style=\"color: navy\">)</span> <i>&quot;day&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
  ] ; # 
  fhir:url [ fhir:v "https://interop.esante.gouv.fr/ig/fhir/eds/StructureMap/Person"^^xsd:anyURI] ; # 
  fhir:version [ fhir:v "0.1.0"] ; # 
  fhir:name [ fhir:v "Person"] ; # 
  fhir:title [ fhir:v "Mapping Patient resource to Person OMOP Domain"] ; # 
  fhir:status [ fhir:v "draft"] ; # 
  fhir:date [ fhir:v "2024-11-23T19:10:09+00:00"^^xsd:dateTime] ; # 
  fhir:publisher [ fhir:v "ANS"] ; # 
  fhir:contact ( [
fhir:name [ fhir:v "ANS" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "https://esante.gouv.fr" ]     ] )
  ] ) ; # 
  fhir:description [ fhir:v "Mapping Patient resource to Person OMOP Domain"] ; # 
  fhir:jurisdiction ( [
    ( fhir:coding [
fhir:system [ fhir:v "urn:iso:std:iso:3166"^^xsd:anyURI ] ;
fhir:code [ fhir:v "FR" ] ;
fhir:display [ fhir:v "France" ]     ] )
  ] ) ; # 
  fhir:structure ( [
fhir:url [
fhir:v "http://hl7.org/fhir/StructureDefinition/Patient"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/StructureDefinition/Patient>     ] ;
fhir:mode [ fhir:v "source" ] ;
fhir:alias [ fhir:v "Patient" ]
  ] [
fhir:url [
fhir:v "https://interop.esante.gouv.fr/ig/fhir/eds/StructureDefinition/OMOPPerson"^^xsd:anyURI ;
fhir:link <https://interop.esante.gouv.fr/ig/fhir/eds/StructureDefinition/OMOPPerson>     ] ;
fhir:mode [ fhir:v "target" ] ;
fhir:alias [ fhir:v "PersonTable" ]
  ] ) ; # 
  fhir:group ( [
fhir:name [ fhir:v "Person" ] ;
fhir:typeMode [ fhir:v "none" ] ;
    ( fhir:input [
fhir:name [ fhir:v "src" ] ;
fhir:type [ fhir:v "Patient" ] ;
fhir:mode [ fhir:v "source" ]     ] [
fhir:name [ fhir:v "tgt" ] ;
fhir:type [ fhir:v "PersonTable" ] ;
fhir:mode [ fhir:v "target" ]     ] ) ;
    ( fhir:rule [
fhir:name [ fhir:v "id" ] ;
      ( fhir:source [
fhir:context [ fhir:v "src" ] ;
fhir:element [ fhir:v "id" ] ;
fhir:variable [ fhir:v "srcId" ]       ] ) ;
      ( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:contextType [ fhir:v "variable" ] ;
fhir:element [ fhir:v "person_source_value" ] ;
fhir:transform [ fhir:v "copy" ] ;
        ( fhir:parameter [
fhir:value [ fhir:v "srcId" ]         ] )       ] )     ] [
fhir:name [ fhir:v "gender" ] ;
      ( fhir:source [
fhir:context [ fhir:v "src" ] ;
fhir:element [ fhir:v "gender" ] ;
fhir:variable [ fhir:v "srcGender" ]       ] ) ;
      ( fhir:rule [
fhir:name [ fhir:v "refConcept" ] ;
        ( fhir:source [
fhir:context [ fhir:v "srcGender" ]         ] ) ;
        ( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:contextType [ fhir:v "variable" ] ;
fhir:element [ fhir:v "gender_concept_id" ] ;
fhir:variable [ fhir:v "tgtReference" ] ;
fhir:transform [ fhir:v "create" ] ;
          ( fhir:parameter [
fhir:value [ fhir:v "Reference" ]           ] )         ] ) ;
        ( fhir:rule [
fhir:name [ fhir:v "ref" ] ;
          ( fhir:source [
fhir:context [ fhir:v "srcGender" ]           ] ) ;
          ( fhir:target [
fhir:contextType [ fhir:v "variable" ] ;
fhir:variable [ fhir:v "genderCode" ] ;
fhir:transform [ fhir:v "translate" ] ;
            ( fhir:parameter [
fhir:value [ fhir:v "srcGender" ]             ] [
fhir:value [ fhir:v "https://interop.esante.gouv.fr/ig/fhir/eds/ConceptMap/hl7Gender2OhdsiGender" ]             ] [
fhir:value [ fhir:v "code" ]             ] )           ] [
fhir:context [ fhir:v "tgtReference" ] ;
fhir:contextType [ fhir:v "variable" ] ;
fhir:element [ fhir:v "reference" ] ;
fhir:transform [ fhir:v "append" ] ;
            ( fhir:parameter [
fhir:value [ fhir:v "Concept/" ]             ] [
fhir:value [ fhir:v "genderCode" ]             ] )           ] )         ] )       ] [
fhir:name [ fhir:v "sourceGender" ] ;
        ( fhir:source [
fhir:context [ fhir:v "srcGender" ]         ] ) ;
        ( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:contextType [ fhir:v "variable" ] ;
fhir:element [ fhir:v "gender_source_value" ] ;
fhir:transform [ fhir:v "copy" ] ;
          ( fhir:parameter [
fhir:value [ fhir:v "srcGender" ]           ] )         ] )       ] )     ] [
fhir:name [ fhir:v "birthDate" ] ;
      ( fhir:source [
fhir:context [ fhir:v "src" ] ;
fhir:element [ fhir:v "birthDate" ] ;
fhir:variable [ fhir:v "srcBirthDate" ]       ] ) ;
      ( fhir:rule [
fhir:name [ fhir:v "dateTime" ] ;
        ( fhir:source [
fhir:context [ fhir:v "srcBirthDate" ]         ] ) ;
        ( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:contextType [ fhir:v "variable" ] ;
fhir:element [ fhir:v "birth_datetime" ] ;
fhir:transform [ fhir:v "copy" ] ;
          ( fhir:parameter [
fhir:value [ fhir:v "srcBirthDate" ]           ] )         ] )       ] [
fhir:name [ fhir:v "year" ] ;
        ( fhir:source [
fhir:context [ fhir:v "srcBirthDate" ]         ] ) ;
        ( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:contextType [ fhir:v "variable" ] ;
fhir:element [ fhir:v "year_of_birth" ] ;
fhir:transform [ fhir:v "evaluate" ] ;
          ( fhir:parameter [
fhir:value [ fhir:v "%srcBirthDate.toString().substring(0, 4).toInteger()" ]           ] )         ] )       ] [
fhir:name [ fhir:v "month" ] ;
        ( fhir:source [
fhir:context [ fhir:v "srcBirthDate" ]         ] ) ;
        ( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:contextType [ fhir:v "variable" ] ;
fhir:element [ fhir:v "month_of_birth" ] ;
fhir:transform [ fhir:v "evaluate" ] ;
          ( fhir:parameter [
fhir:value [ fhir:v "%srcBirthDate.toString().substring(5, 2).toInteger()" ]           ] )         ] )       ] [
fhir:name [ fhir:v "day" ] ;
        ( fhir:source [
fhir:context [ fhir:v "srcBirthDate" ]         ] ) ;
        ( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:contextType [ fhir:v "variable" ] ;
fhir:element [ fhir:v "day_of_birth" ] ;
fhir:transform [ fhir:v "evaluate" ] ;
          ( fhir:parameter [
fhir:value [ fhir:v "%srcBirthDate.toString().substring(8, 2).toInteger()" ]           ] )         ] )       ] )     ] )
  ] ) . #