Data Management with FHIR
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Logical Model: OMOPNoteNLP - Detailed Descriptions

Draft as of 2025-10-23

Definitions for the OMOPNoteNLP logical model.

Guidance on how to interpret the contents of this table can be foundhere

0. OMOPNoteNLP
Définition

The NOTE_NLP table encodes all output of NLP on clinical notes. Each row represents a single extracted term from a note.

ShortNote NLP OMOP Table
Control0..*
Is Modifierfalse
Logical ModelInstances of this logical model are not marked to be the target of a Reference
2. OMOPNoteNLP.note-nlp-id
Définition

Note NLP Identifier

ShortNote NLP Identifier
Control1..1
Typeinteger
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
4. OMOPNoteNLP.note-id
Définition

This is the NOTE_ID for the NOTE record the NLP record is associated to.

ShortNote
Control1..1
TypeReference(Note OMOP Table)
6. OMOPNoteNLP.section-concept-id
Définition

Section

ShortSection
Control0..1
TypeReference(Concept OMOP Table)
8. OMOPNoteNLP.snippet
Définition

A small window of text surrounding the term

ShortSnippet
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
10. OMOPNoteNLP.offset
Définition

Character offset of the extracted term in the input note

ShortOffset
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
12. OMOPNoteNLP.lexical-variant
Définition

Raw text extracted from the NLP tool.

ShortLexical Variant
Control1..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
14. OMOPNoteNLP.note-nlp-concept-id
Définition

Note NLP

ShortNote NLP
Control0..1
TypeReference(Concept OMOP Table)
16. OMOPNoteNLP.note-nlp-source-concept-id
Définition

Note NLP Source

ShortNote NLP Source
Control0..1
TypeReference(Concept OMOP Table)
18. OMOPNoteNLP.nlp-system
Définition

NLP System

ShortNLP System
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
20. OMOPNoteNLP.nlp-date
Définition

The date of the note processing.

ShortNLP Date
Control1..1
Typedate
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
22. OMOPNoteNLP.nlp-datetime
Définition

The date and time of the note processing.

ShortNLP Datetime
Control0..1
TypedateTime
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
24. OMOPNoteNLP.term-exists
Définition

Term Exists

ShortTerm Exists
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
26. OMOPNoteNLP.term-temporal
Définition

Term Temporal

ShortTerm Temporal
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
28. OMOPNoteNLP.term-modifiers
Définition

Term Modifiers

ShortTerm Modifiers
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension

Guidance on how to interpret the contents of this table can be foundhere

0. OMOPNoteNLP
Définition

The NOTE_NLP table encodes all output of NLP on clinical notes. Each row represents a single extracted term from a note.

ShortNote NLP OMOP Table
Logical ModelInstances of this logical model are not marked to be the target of a Reference
2. OMOPNoteNLP.note-nlp-id
Définition

Note NLP Identifier

ShortNote NLP Identifier
Control1..1
Typeinteger
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
4. OMOPNoteNLP.note-id
Définition

This is the NOTE_ID for the NOTE record the NLP record is associated to.

ShortNote
Control1..1
TypeReference(Note OMOP Table)
6. OMOPNoteNLP.section-concept-id
Définition

Section

ShortSection
Control0..1
TypeReference(Concept OMOP Table)
8. OMOPNoteNLP.snippet
Définition

A small window of text surrounding the term

ShortSnippet
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
10. OMOPNoteNLP.offset
Définition

Character offset of the extracted term in the input note

ShortOffset
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
12. OMOPNoteNLP.lexical-variant
Définition

Raw text extracted from the NLP tool.

ShortLexical Variant
Control1..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
14. OMOPNoteNLP.note-nlp-concept-id
Définition

Note NLP

ShortNote NLP
Control0..1
TypeReference(Concept OMOP Table)
16. OMOPNoteNLP.note-nlp-source-concept-id
Définition

Note NLP Source

ShortNote NLP Source
Control0..1
TypeReference(Concept OMOP Table)
18. OMOPNoteNLP.nlp-system
Définition

NLP System

ShortNLP System
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
20. OMOPNoteNLP.nlp-date
Définition

The date of the note processing.

ShortNLP Date
Control1..1
Typedate
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
22. OMOPNoteNLP.nlp-datetime
Définition

The date and time of the note processing.

ShortNLP Datetime
Control0..1
TypedateTime
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
24. OMOPNoteNLP.term-exists
Définition

Term Exists

ShortTerm Exists
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
26. OMOPNoteNLP.term-temporal
Définition

Term Temporal

ShortTerm Temporal
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
28. OMOPNoteNLP.term-modifiers
Définition

Term Modifiers

ShortTerm Modifiers
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension

Guidance on how to interpret the contents of this table can be foundhere

0. OMOPNoteNLP
Définition

The NOTE_NLP table encodes all output of NLP on clinical notes. Each row represents a single extracted term from a note.

ShortNote NLP OMOP Table
Control0..*
Is Modifierfalse
Logical ModelInstances of this logical model are not marked to be the target of a Reference
2. OMOPNoteNLP.note-nlp-id
Définition

Note NLP Identifier

ShortNote NLP Identifier
Control1..1
Typeinteger
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
4. OMOPNoteNLP.note-id
Définition

This is the NOTE_ID for the NOTE record the NLP record is associated to.

ShortNote
Control1..1
TypeReference(Note OMOP Table)
6. OMOPNoteNLP.section-concept-id
Définition

Section

ShortSection
Control0..1
TypeReference(Concept OMOP Table)
8. OMOPNoteNLP.snippet
Définition

A small window of text surrounding the term

ShortSnippet
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
10. OMOPNoteNLP.offset
Définition

Character offset of the extracted term in the input note

ShortOffset
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
12. OMOPNoteNLP.lexical-variant
Définition

Raw text extracted from the NLP tool.

ShortLexical Variant
Control1..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
14. OMOPNoteNLP.note-nlp-concept-id
Définition

Note NLP

ShortNote NLP
Control0..1
TypeReference(Concept OMOP Table)
16. OMOPNoteNLP.note-nlp-source-concept-id
Définition

Note NLP Source

ShortNote NLP Source
Control0..1
TypeReference(Concept OMOP Table)
18. OMOPNoteNLP.nlp-system
Définition

NLP System

ShortNLP System
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
20. OMOPNoteNLP.nlp-date
Définition

The date of the note processing.

ShortNLP Date
Control1..1
Typedate
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
22. OMOPNoteNLP.nlp-datetime
Définition

The date and time of the note processing.

ShortNLP Datetime
Control0..1
TypedateTime
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
24. OMOPNoteNLP.term-exists
Définition

Term Exists

ShortTerm Exists
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
26. OMOPNoteNLP.term-temporal
Définition

Term Temporal

ShortTerm Temporal
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
28. OMOPNoteNLP.term-modifiers
Définition

Term Modifiers

ShortTerm Modifiers
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension