Guide d'implémentation du GT Standards et Interopérabilité pour les EDS
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: Mapping Observation laboratory resources to Measurement OMOP Domain - JSON Representation

Draft as of 2024-11-23

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{
  "resourceType" : "StructureMap",
  "id" : "Measurement",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: StructureMap Measurement</b></p><a name=\"Measurement\"> </a><a name=\"hcMeasurement\"> </a><a name=\"Measurement-fr-FR\"> </a><pre class=\"fml\">\r\n<b>map</b><span style=\"color: navy\"> &quot;</span>https://interop.esante.gouv.fr/ig/fhir/eds/StructureMap/Measurement<span style=\"color: navy\">&quot; = &quot;</span>Measurement<span style=\"color: navy\">&quot;\r\n\r\n</span><span style=\"color: navy\">// </span><span style=\"color: green\">Mapping Observation laboratory resources to Measurement OMOP Domain</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span><a href=\"StructureDefinition-EDSObservationLaboratoryGeneric.html\" title=\"Résultat de laboratoire\">https://interop.esante.gouv.fr/ig/fhir/eds/StructureDefinition/EDSObservationLaboratoryGeneric</a><span style=\"color: navy\">&quot; </span><b>alias </b>LabObs <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span><a href=\"StructureDefinition-LogicalBundle.html\" title=\"LogicalBundle\">https://interop.esante.gouv.fr/ig/fhir/eds/StructureDefinition/LogicalBundle</a><span style=\"color: navy\">&quot; </span><b>alias </b>LogicalBundle <b>as </b><b>target</b>\r\n<b>uses</b><span style=\"color: navy\"> &quot;</span><a href=\"StructureDefinition-OMOPMeasurement.html\" title=\"Measurement OMOP Table\">https://interop.esante.gouv.fr/ig/fhir/eds/StructureDefinition/OMOPMeasurement</a><span style=\"color: navy\">&quot; </span><b>alias </b>MeasurementTable <b>as </b><b>target</b>\r\n\r\n<b>imports</b><span style=\"color: navy\"> &quot;</span><a href=\"StructureMap-SimpleObservation.html\" title=\"Mapping simple Observation laboratory resources to Measurement OMOP Domain\">https://interop.esante.gouv.fr/ig/fhir/eds/StructureMap/SimpleObservation</a><span style=\"color: navy\">&quot;\r\n</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">imports &quot;https://interop.esante.gouv.fr/ig/fhir/eds/StructureMap/ComplexMeasurement&quot;</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">imports &quot;https://interop.esante.gouv.fr/ig/fhir/eds/StructureMap/*Measurement&quot;</span>\r\n<b>group </b>Observation<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>LabObs, <b>target</b> <span style=\"color: maroon\">tgtBundle</span><span style=\"color: navy\"> : </span>LogicalBundle<span style=\"color: navy\">)</span><span style=\"color: navy\"> {\r\n</span>  src<span style=\"color: navy\"><b> -&gt; </b></span>tgtBundle.id = <b>uuid</b><span style=\"color: navy\">(</span><span style=\"color: navy\">)</span> <i>&quot;setId&quot;</i><span style=\"color: navy\">;</span>\r\n  src<span style=\"color: navy\"><b> -&gt; </b></span>tgtBundle.type = <span style=\"color: blue\">'transaction'</span> <i>&quot;setType&quot;</i><span style=\"color: navy\">;</span>\r\n  src<b> where </b>code.coding.code in ('14682-9' | '22664-7' | '77147-7')<span style=\"color: navy\"><b> -&gt; </b></span>tgtBundle.entry<b> as </b><span style=\"color: maroon\">newEntry</span><b> then</b><span style=\"color: navy\"> {\r\n</span>    src<span style=\"color: navy\"><b> -&gt; </b></span>newEntry.measurement = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'MeasurementTable'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">newMeasurement</span><b> then</b><span style=\"color: navy\"> {\r\n</span>      src<b> then </b>SimpleObservation<span style=\"color: navy\">(</span><span style=\"color: maroon\">src</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">newMeasurement</span><span style=\"color: navy\">)</span> <i>&quot;transformSimpleObservation&quot;</i><span style=\"color: navy\">;</span>\r\n    <span style=\"color: navy\">}</span> <i>&quot;createSimpleObservation&quot;</i><span style=\"color: navy\">;</span>\r\n  <span style=\"color: navy\">}</span> <i>&quot;newEntrySimpleObservation&quot;</i><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">// </span><span style=\"color: green\">src where code.coding.code in ('50197-3') -&gt; tgtBundle.entry as newEntry then {         src -&gt; newEntry.measurement = create(&quot;MeasurementTable&quot;) as newMeasurement then {             src then ComplexMeasurement(src, newMeasurement) &quot;transformComplexMeasurement&quot;;         } &quot;createComplexMeasurement&quot;;     } &quot;newEntryComplexMeasurement&quot;;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
  },
  "url" : "https://interop.esante.gouv.fr/ig/fhir/eds/StructureMap/Measurement",
  "version" : "0.1.0",
  "name" : "Measurement",
  "title" : "Mapping Observation laboratory resources to Measurement OMOP Domain",
  "status" : "draft",
  "date" : "2024-11-23T19:10:09+00:00",
  "publisher" : "ANS",
  "contact" : [
    {
      "name" : "ANS",
      "telecom" : [
        {
          "system" : "url",
          "value" : "https://esante.gouv.fr"
        }
      ]
    }
  ],
  "description" : "Mapping Observation laboratory resources to Measurement OMOP Domain",
  "jurisdiction" : [
    {
      "coding" : [
        {
          "system" : "urn:iso:std:iso:3166",
          "code" : "FR",
          "display" : "France"
        }
      ]
    }
  ],
  "structure" : [
    {
      "url" : "https://interop.esante.gouv.fr/ig/fhir/eds/StructureDefinition/EDSObservationLaboratoryGeneric",
      "mode" : "source",
      "alias" : "LabObs"
    },
    {
      "url" : "https://interop.esante.gouv.fr/ig/fhir/eds/StructureDefinition/LogicalBundle",
      "mode" : "target",
      "alias" : "LogicalBundle"
    },
    {
      "url" : "https://interop.esante.gouv.fr/ig/fhir/eds/StructureDefinition/OMOPMeasurement",
      "mode" : "target",
      "alias" : "MeasurementTable"
    }
  ],
  "import" : [
    🔗 "https://interop.esante.gouv.fr/ig/fhir/eds/StructureMap/SimpleObservation"
  ],
  "group" : [
    {
      "name" : "Observation",
      "typeMode" : "none",
      "documentation" : "imports \"https://interop.esante.gouv.fr/ig/fhir/eds/StructureMap/ComplexMeasurement\"\r\nimports \"https://interop.esante.gouv.fr/ig/fhir/eds/StructureMap/*Measurement\"",
      "input" : [
        {
          "name" : "src",
          "type" : "LabObs",
          "mode" : "source"
        },
        {
          "name" : "tgtBundle",
          "type" : "LogicalBundle",
          "mode" : "target"
        }
      ],
      "rule" : [
        {
          "name" : "setId",
          "source" : [
            {
              "context" : "src"
            }
          ],
          "target" : [
            {
              "context" : "tgtBundle",
              "contextType" : "variable",
              "element" : "id",
              "transform" : "uuid"
            }
          ]
        },
        {
          "name" : "setType",
          "source" : [
            {
              "context" : "src"
            }
          ],
          "target" : [
            {
              "context" : "tgtBundle",
              "contextType" : "variable",
              "element" : "type",
              "transform" : "copy",
              "parameter" : [
                {
                  "valueString" : "transaction"
                }
              ]
            }
          ]
        },
        {
          "name" : "newEntrySimpleObservation",
          "source" : [
            {
              "context" : "src",
              "condition" : "code.coding.code in ('14682-9' | '22664-7' | '77147-7')"
            }
          ],
          "target" : [
            {
              "context" : "tgtBundle",
              "contextType" : "variable",
              "element" : "entry",
              "variable" : "newEntry"
            }
          ],
          "rule" : [
            {
              "name" : "createSimpleObservation",
              "source" : [
                {
                  "context" : "src"
                }
              ],
              "target" : [
                {
                  "context" : "newEntry",
                  "contextType" : "variable",
                  "element" : "measurement",
                  "variable" : "newMeasurement",
                  "transform" : "create",
                  "parameter" : [
                    {
                      "valueString" : "MeasurementTable"
                    }
                  ]
                }
              ],
              "rule" : [
                {
                  "name" : "transformSimpleObservation",
                  "source" : [
                    {
                      "context" : "src"
                    }
                  ],
                  "dependent" : [
                    {
                      "name" : "SimpleObservation",
                      "variable" : [
                        "src",
                        "newMeasurement"
                      ]
                    }
                  ]
                }
              ]
            }
          ]
        }
      ]
    }
  ]
}