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Diabetes

Presentation

For the moment, we provide a diabetes phenotyping function based solely on ICD-10 codes.

The `diabetes_from_icd10()` function

from eds_scikit.io import HiveData
data = HiveData(DBNAME)

from eds_scikit.event import diabetes_from_icd10

visit_occurrence = diabetes_from_icd10(
    data.condition_occurrence,
    data.visit_occurrence,
)

The snippet above will run as is and add two columns to the condition_occurrence DataFrame:

A "concept" column, containing the "DIABETES_FROM_ICD10" value
A "value" column, containing the type of diabetes extracted

Please check the code reference for a complete explanation of the function.