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Understanding eds-scikit
Understanding eds-scikit
Project description
A gentle demo
Functionalities
Functionalities
Connectors
Phenotyping
Phenotyping
The `Phenotype` class
Available phenotypes
Available phenotypes
Cancer
Diabetes
Suicide Attempt
Psychiatric disorder
Patient's Course
Patient's Course
ICU
Emergency Units
Visit merging
Consultation dates
OMOP Teva
OMOP Teva
OMOP Teva - Quick use
OMOP Teva - Config
Custom Teva
OMOP Teva example
Biology
Biology
Quick use
Visualizing measurements
Detailed use
Terminologies relationships
Predefined concepts sets
About measurement
Plotting
Plotting
Event sequence
Generating inclusion/exclusion flowchart
Age pyramid
Recipes
Recipes
Saving small cohorts locally
Resources
Resources
A note on private resources
Biology
Biology
Concept sets
Care sites
Care sites
Hierarchy
Emergency
Synthetic data
Code Reference
Code Reference
eds_scikit
eds_scikit
biology
biology
cleaning
cleaning
cohort
main
utils
utils
check_data
config
prepare_measurement
prepare_relationship
process_concepts
process_measurement
process_units
viz
viz
aggregate
plot
stats_summary
wrapper
datasets
datasets
generation_scripts
generation_scripts
care_site_hierarchy
synthetic
synthetic
base_dataset
biology
ccam
consultation_dates
event_sequences
hierarchy
icd10
person
stay_duration
suicide_attempt
tagging
visit_merging
emergency
emergency
emergency_care_site
emergency_visit
event
event
ccam
consultations
diabetes
from_code
icd10
suicide_attempt
icu
icu
icu_care_site
icu_visit
io
io
base
data_quality
files
hive
i2b2_mapping
improve_performance
omop_teva_default_config
postgres
settings
period
period
stays
tagging_functions
phenotype
phenotype
base
cancer
cancer
cancer
diabetes
diabetes
diabetes
psychiatric_disorder
psychiatric_disorder
psychiatric_disorder
suicide_attempt
suicide_attempt
suicide_attempt
plot
plot
age_pyramid
altair_utils
event_sequences
omop_teva
table_viz
resources
resources
reg
utils
structures
structures
attributes
description
utils
utils
bunch
checks
custom_implem
custom_implem
custom_implem
cut
datetime_helpers
flowchart
flowchart
flowchart
framework
hierarchy
logging
test_utils
typing
Contributing
Changelog
eds_scikit
Top-level package for eds_scikit.
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