OMOP Teva example
The dashboard below provides an example of OMOP Teva dashboard for the visit_occurrence table.
Explore this dashboard to identify any abnormal data distributions that could lead to bias.
Solution : The Psychological department at care site 1 appears to produce unusual NaN values after June.
{
"$schema": "https://vega.github.io/schema/vega-lite/v5.8.0.json",
"config": {
"legend": {
"columns": 4,
"symbolLimit": 0
},
"view": {
"continuousHeight": 300,
"continuousWidth": 300
}
},
"data": {
"name": "data-8ebd6cc9cd8e33a2c58b3179f42f592a"
},
"datasets": {
"data-8ebd6cc9cd8e33a2c58b3179f42f592a": [
{
"care_site_short_name": "care site 1",
"count": 12,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 1",
"count": 5,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 1",
"count": 1,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "NaN"
},
{
"care_site_short_name": "care site 1",
"count": 5,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 1",
"count": 8,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 1",
"count": 4,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 1",
"count": 8,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 2",
"count": 6,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 2",
"count": 2,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 2",
"count": 1,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 3",
"count": 1,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "NaN"
},
{
"care_site_short_name": "care site 3",
"count": 2,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 3",
"count": 3,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 3",
"count": 6,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 3",
"count": 4,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 3",
"count": 2,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 3",
"count": 10,
"datetime": "2021-01-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 1",
"count": 2,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "NaN"
},
{
"care_site_short_name": "care site 1",
"count": 11,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 1",
"count": 11,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 1",
"count": 2,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "NaN"
},
{
"care_site_short_name": "care site 1",
"count": 9,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 1",
"count": 10,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 1",
"count": 1,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "NaN"
},
{
"care_site_short_name": "care site 1",
"count": 8,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 1",
"count": 8,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 2",
"count": 1,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 2",
"count": 3,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 2",
"count": 1,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 2",
"count": 1,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 3",
"count": 1,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "NaN"
},
{
"care_site_short_name": "care site 3",
"count": 4,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 3",
"count": 3,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 3",
"count": 1,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "NaN"
},
{
"care_site_short_name": "care site 3",
"count": 3,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 3",
"count": 1,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 3",
"count": 4,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 3",
"count": 4,
"datetime": "2021-02-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 1",
"count": 6,
"datetime": "2021-03-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 1",
"count": 8,
"datetime": "2021-03-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 1",
"count": 6,
"datetime": "2021-03-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 1",
"count": 7,
"datetime": "2021-03-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 1",
"count": 11,
"datetime": "2021-03-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 1",
"count": 6,
"datetime": "2021-03-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 2",
"count": 3,
"datetime": "2021-03-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 2",
"count": 3,
"datetime": "2021-03-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 2",
"count": 4,
"datetime": "2021-03-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 3",
"count": 3,
"datetime": "2021-03-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 3",
"count": 6,
"datetime": "2021-03-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 3",
"count": 1,
"datetime": "2021-03-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 3",
"count": 4,
"datetime": "2021-03-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 3",
"count": 3,
"datetime": "2021-03-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 3",
"count": 3,
"datetime": "2021-03-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 1",
"count": 1,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "NaN"
},
{
"care_site_short_name": "care site 1",
"count": 8,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 1",
"count": 5,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 1",
"count": 8,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 1",
"count": 7,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 1",
"count": 6,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 1",
"count": 2,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 2",
"count": 1,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "NaN"
},
{
"care_site_short_name": "care site 2",
"count": 3,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 2",
"count": 1,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 2",
"count": 4,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 2",
"count": 1,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 2",
"count": 1,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "NaN"
},
{
"care_site_short_name": "care site 2",
"count": 1,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 3",
"count": 3,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "NaN"
},
{
"care_site_short_name": "care site 3",
"count": 7,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 3",
"count": 2,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 3",
"count": 4,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 3",
"count": 5,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 3",
"count": 3,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 3",
"count": 1,
"datetime": "2021-04-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 1",
"count": 2,
"datetime": "2021-05-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "NaN"
},
{
"care_site_short_name": "care site 1",
"count": 11,
"datetime": "2021-05-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 1",
"count": 12,
"datetime": "2021-05-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 1",
"count": 1,
"datetime": "2021-05-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "NaN"
},
{
"care_site_short_name": "care site 1",
"count": 6,
"datetime": "2021-05-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 1",
"count": 5,
"datetime": "2021-05-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 1",
"count": 2,
"datetime": "2021-05-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "NaN"
},
{
"care_site_short_name": "care site 1",
"count": 9,
"datetime": "2021-05-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 1",
"count": 4,
"datetime": "2021-05-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 2",
"count": 1,
"datetime": "2021-05-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 2",
"count": 1,
"datetime": "2021-05-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "NaN"
},
{
"care_site_short_name": "care site 2",
"count": 1,
"datetime": "2021-05-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 2",
"count": 2,
"datetime": "2021-05-01T00:00:00",
"stay_source_value": "PSY",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 3",
"count": 5,
"datetime": "2021-05-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "consult"
},
{
"care_site_short_name": "care site 3",
"count": 5,
"datetime": "2021-05-01T00:00:00",
"stay_source_value": "MCO",
"visit_occurrence_id": "not NaN",
"visit_source_value": "hospit"
},
{
"care_site_short_name": "care site 3",
"count": 1,
"datetime": "2021-05-01T00:00:00",
"stay_source_value": "Other",
"visit_occurrence_id": "not NaN",
"visit_source_value": "NaN"
},
{
"care_site_short_name": "care site 3",
"count": 2,
"datetime": "2021-05-01T00:00:00",
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}