Predefined concepts sets
Those concept sets can be found in eds_scikit.datasets.default_concepts_sets.
How were the code selected ?
Each concept set codes were selected by coding system expert and validated through statistical analysis. However new codes may appear or become outdated. Feel free to propose new concept sets or concept codes !
Blood Count Cell Ionogram Blood Gas Hepatic Panel Cardiac Biomarkers Inflammatory Panel Martial Panel Renal Panel Coagulation Proteins Diabete Inflammatory Biomarkers
concepts_set_name
GLIMS_ANABIO_concept_code
Hemoglobin_Blood_Count
['A0163', 'H6738']
Leukocytes_Blood_Count
['A0174', 'H6740', 'C8824']
Platelets_Blood_Count
['A0230', 'H6751', 'A1598', 'A1598', 'A2538', 'A2539', 'A2539', 'J4463']
Lymphocytes_Blood_Count
['A0198', 'H6743']
Monocytes_Blood_Count
['A0210', 'H6747']
Neutrophil_Polymorphonuclears_Blood_Count
['A0155', 'H6732']
...
...
concepts_set_name
GLIMS_ANABIO_concept_code
Bicarbonate_Blood_Concentration
['A0422', 'H9622', 'C6408', 'F4161', 'A2136', 'J7371', 'G2031']
Calcium_Blood_Concentration
['C0543', 'D2359', 'A0038', 'H5041', 'F2625', 'L5047', 'A2512', 'A2512', 'A0607']
Chloride_Blood_Concentration
['A0079', 'J1179', 'F2619']
Potassium_Blood_Concentration
['A2380', 'E2073', 'F2618', 'E2337', 'J1178']
...
...
concepts_set_name
GLIMS_ANABIO_concept_code
HCO3-_Blood_Concentration
['A0420', 'L5018']
Lactate_Gaz_Blood_Concentration
['C8697', 'H7748']
PaCO2_Blood_Concentration
['A7305', 'A0630']
PaO2_Blood_Concentration
['A7319', 'H7747']
SaO2_Blood_Concentration
['A7334', 'L5021']
...
...
concepts_set_name
GLIMS_ANABIO_concept_code
ALAT_Activity
['A0002', 'G1804', 'J7373', 'E2067', 'F2629']
ASAT_Activity
['A0022', 'G1800', 'E2068', 'F2628']
GGT_Activity
['A0131', 'F8184', 'E9771', 'J7370', 'K7045']
PAL_Activity
['A0227', 'F8187', 'E6331', 'F1844']
...
...
concepts_set_name
GLIMS_ANABIO_concept_code
BNP_Concentration
['C8189', 'B5596', 'A2128']
BNP_and_NTProBNP_Concentration
['C8189', 'B5596', 'A2128', 'A7333', 'J7267', 'J7959']
NTProBNP_Concentration
['A7333', 'J7267', 'J7959']
...
...
concepts_set_name
GLIMS_ANABIO_concept_code
CRP_Concentration
['A0248', 'E6332', 'F5581', 'J7381', 'F2631']
Fibrinogen_Concentration
['A0126']
...
...
concepts_set_name
GLIMS_ANABIO_concept_code
Ferritin_Concentration
['A0123', 'E9865']
...
...
concepts_set_name
GLIMS_ANABIO_concept_code
Glomerular_Filtration_Rate_EPI_CKD
['G6921', 'F8160', 'F9613', 'F9621', 'F9621']
Glomerular_Filtration_Rate_MDRD
['F9622', 'G7835', 'B9964', 'A7456', 'A7455', 'H5609']
...
...
concepts_set_name
GLIMS_ANABIO_concept_code
Activated_Partial_Thromboplastin_Time
['A1792', 'L7286', 'A7748']
D-Dimers_Concentration
['C7882', 'C7882', 'I8765', 'A0124', 'C0474', 'C0474', 'C0474', 'B4199', 'F5402']
Quick_INR_Time
['A0269']
...
...
concepts_set_name
GLIMS_ANABIO_concept_code
Albumine_Blood_Concentration
['D2358', 'C6841', 'C2102', 'G6616', 'L2260', 'A0006', 'E4799', 'I2013']
EPP_Blood_Concentration
['A0250', 'C9874', 'A3758', 'A0004', 'F9978', 'A0005', 'H8137', 'C7087', 'A0003', 'C7088', 'B9456', 'B9455', 'A0008', 'H8138', 'C7089', 'A0007'...
Phosphates_Blood_Concentration
['A0226', 'F8186', 'F2626']
...
...
concepts_set_name
GLIMS_ANABIO_concept_code
B-HCG_Blood_Concentration
['A7426', 'F2353', 'A0164', 'L2277']
Glucose_Blood_Concentration
['A0141', 'H7323', 'J7401', 'F2622', 'B9553', 'C7236', 'E7312', 'A7338', 'H7324', 'C0565', 'E9889', 'A8424']
HbA1c_Blood_%
['B6983', 'A2228', 'A1271', 'E6632', 'I5968']
...
...
concepts_set_name
GLIMS_ANABIO_concept_code
IL-1 beta_Blood_Concentration
['C9351', 'B8921', 'G4800', 'K3662', 'L2217', 'J9193', 'K3665', 'K3687', 'K3661', 'L2197']
IL-10_Blood_Concentration
['B8922', 'C8763', 'K3478', 'L2210', 'J9187', 'K3481', 'K3472', 'K3475', 'L2198']
IL-6_Blood_Concentration
['B8929', 'G4799', 'B1910', 'K3467', 'L2205', 'E6992', 'J9190', 'K3456', 'L2193', 'K3435', 'K3460']
Procalcitonin_Blood_Concentration
['A1661', 'H5267', 'F2632']
...
...