# Specimen OMOP Table - Data Management with FHIR v0.1.0

* [**Table of Contents**](toc.md)
* [**Artifacts Summary**](artifacts.md)
* **Specimen OMOP Table**

## Logical Model: Specimen OMOP Table 

| | |
| :--- | :--- |
| *Official URL*:https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPSpecimen | *Version*:0.1.0 |
| Draft as of 2025-10-23 | *Computable Name*:OMOPSpecimen |

 
The specimen domain contains the records identifying biological samples from a person. 

**Usages:**

* This Logical Model is not used by any profiles in this Implementation Guide

You can also check for [usages in the FHIR IG Statistics](https://packages2.fhir.org/xig/aphp.fhir.fr.dm|current/StructureDefinition/OMOPSpecimen)

### Formal Views of Profile Content

 [Description of Profiles, Differentials, Snapshots and how the different presentations work](http://build.fhir.org/ig/FHIR/ig-guidance/readingIgs.html#structure-definitions). 

 

Other representations of profile: [CSV](StructureDefinition-OMOPSpecimen.csv), [Excel](StructureDefinition-OMOPSpecimen.xlsx) 



## Resource Content

```json
{
  "resourceType" : "StructureDefinition",
  "id" : "OMOPSpecimen",
  "extension" : [
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-type-characteristics",
      "valueCode" : "can-be-target"
    }
  ],
  "url" : "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPSpecimen",
  "version" : "0.1.0",
  "name" : "OMOPSpecimen",
  "title" : "Specimen OMOP Table",
  "status" : "draft",
  "date" : "2025-10-23T20:49:03+00:00",
  "publisher" : "AP-HP",
  "contact" : [
    {
      "name" : "AP-HP",
      "telecom" : [
        {
          "system" : "url",
          "value" : "https://aphp.fr"
        }
      ]
    }
  ],
  "description" : "The specimen domain contains the records identifying biological samples from a person.",
  "jurisdiction" : [
    {
      "coding" : [
        {
          "system" : "urn:iso:std:iso:3166",
          "code" : "FR",
          "display" : "France"
        }
      ]
    }
  ],
  "fhirVersion" : "4.0.1",
  "kind" : "logical",
  "abstract" : false,
  "type" : "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPSpecimen",
  "baseDefinition" : "http://hl7.org/fhir/StructureDefinition/Base",
  "derivation" : "specialization",
  "differential" : {
    "element" : [
      {
        "id" : "OMOPSpecimen",
        "path" : "OMOPSpecimen",
        "short" : "Specimen OMOP Table",
        "definition" : "The specimen domain contains the records identifying biological samples from a person."
      },
      {
        "id" : "OMOPSpecimen.specimen-id",
        "path" : "OMOPSpecimen.specimen_id",
        "short" : "Specimen Identifier",
        "definition" : "Specimen Identifier",
        "min" : 1,
        "max" : "1",
        "type" : [
          {
            "code" : "integer"
          }
        ]
      },
      {
        "id" : "OMOPSpecimen.person-id",
        "path" : "OMOPSpecimen.person_id",
        "short" : "Person",
        "definition" : "The person from whom the specimen is collected.",
        "min" : 1,
        "max" : "1",
        "type" : [
          {
            "code" : "Reference",
            "targetProfile" : [
              "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPPerson"
            ]
          }
        ]
      },
      {
        "id" : "OMOPSpecimen.specimen-concept-id",
        "path" : "OMOPSpecimen.specimen_concept_id",
        "short" : "Specimen",
        "definition" : "Specimen",
        "min" : 1,
        "max" : "1",
        "type" : [
          {
            "code" : "Reference",
            "targetProfile" : [
              "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept"
            ]
          }
        ]
      },
      {
        "id" : "OMOPSpecimen.specimen-type-concept-id",
        "path" : "OMOPSpecimen.specimen_type_concept_id",
        "short" : "Specimen Type",
        "definition" : "Specimen Type",
        "min" : 1,
        "max" : "1",
        "type" : [
          {
            "code" : "Reference",
            "targetProfile" : [
              "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept"
            ]
          }
        ]
      },
      {
        "id" : "OMOPSpecimen.specimen-date",
        "path" : "OMOPSpecimen.specimen_date",
        "short" : "Specimen Date",
        "definition" : "The date the specimen was collected.",
        "min" : 1,
        "max" : "1",
        "type" : [
          {
            "code" : "date"
          }
        ]
      },
      {
        "id" : "OMOPSpecimen.specimen-datetime",
        "path" : "OMOPSpecimen.specimen_datetime",
        "short" : "Specimen Datetime",
        "definition" : "Specimen Datetime",
        "min" : 0,
        "max" : "1",
        "type" : [
          {
            "code" : "dateTime"
          }
        ]
      },
      {
        "id" : "OMOPSpecimen.quantity",
        "path" : "OMOPSpecimen.quantity",
        "short" : "Quantity",
        "definition" : "The amount of specimen collected from the person.",
        "min" : 0,
        "max" : "1",
        "type" : [
          {
            "code" : "integer"
          }
        ]
      },
      {
        "id" : "OMOPSpecimen.unit-concept-id",
        "path" : "OMOPSpecimen.unit_concept_id",
        "short" : "Unit",
        "definition" : "The unit for the quantity of the specimen.",
        "min" : 0,
        "max" : "1",
        "type" : [
          {
            "code" : "Reference",
            "targetProfile" : [
              "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept"
            ]
          }
        ]
      },
      {
        "id" : "OMOPSpecimen.anatomic-site-concept-id",
        "path" : "OMOPSpecimen.anatomic_site_concept_id",
        "short" : "Anatomic Site",
        "definition" : "This is the site on the body where the specimen is from.",
        "min" : 0,
        "max" : "1",
        "type" : [
          {
            "code" : "Reference",
            "targetProfile" : [
              "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept"
            ]
          }
        ]
      },
      {
        "id" : "OMOPSpecimen.disease-status-concept-id",
        "path" : "OMOPSpecimen.disease_status_concept_id",
        "short" : "Disease Status",
        "definition" : "Disease Status",
        "min" : 0,
        "max" : "1",
        "type" : [
          {
            "code" : "Reference",
            "targetProfile" : [
              "https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept"
            ]
          }
        ]
      },
      {
        "id" : "OMOPSpecimen.specimen-source-id",
        "path" : "OMOPSpecimen.specimen_source_id",
        "short" : "Specimen Source",
        "definition" : "This is the identifier for the specimen from the source system.",
        "min" : 0,
        "max" : "1",
        "type" : [
          {
            "code" : "string"
          }
        ]
      },
      {
        "id" : "OMOPSpecimen.specimen-source-value",
        "path" : "OMOPSpecimen.specimen_source_value",
        "short" : "Specimen Source Value",
        "definition" : "Specimen Source Value",
        "min" : 0,
        "max" : "1",
        "type" : [
          {
            "code" : "string"
          }
        ]
      },
      {
        "id" : "OMOPSpecimen.unit-source-value",
        "path" : "OMOPSpecimen.unit_source_value",
        "short" : "Unit Source Value",
        "definition" : "Unit Source Value",
        "min" : 0,
        "max" : "1",
        "type" : [
          {
            "code" : "string"
          }
        ]
      },
      {
        "id" : "OMOPSpecimen.anatomic-site-source-value",
        "path" : "OMOPSpecimen.anatomic_site_source_value",
        "short" : "Anatomic Site Source Value",
        "definition" : "Anatomic Site Source Value",
        "min" : 0,
        "max" : "1",
        "type" : [
          {
            "code" : "string"
          }
        ]
      },
      {
        "id" : "OMOPSpecimen.disease-status-source-value",
        "path" : "OMOPSpecimen.disease_status_source_value",
        "short" : "Disease Site Source Value",
        "definition" : "Disease Site Source Value",
        "min" : 0,
        "max" : "1",
        "type" : [
          {
            "code" : "string"
          }
        ]
      }
    ]
  }
}

```
