Data Management with FHIR
0.1.0 - ci-build

Data Management with FHIR - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

## Logical Model: OMOPSpecimen - XML Profile

Draft as of 2025-10-23

XML representation of the OMOPSpecimen logical model.

Raw xml | Download

    <StructureDefinition xmlns="http://hl7.org/fhir">
      <id value="OMOPSpecimen"/>
      <text>
        <status value="extensions"/>
        <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Narratif généré : DéfinitionStructure OMOPSpecimen</b></p><table border="0" cellpadding="0" cellspacing="0" style="border: 0px #F0F0F0 solid; font-size: 11px; font-family: verdana; vertical-align: top;"><tr style="border: 1px #F0F0F0 solid; font-size: 11px; font-family: verdana; vertical-align: top"><th style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; padding-top: 3px; padding-bottom: 3px" class="hierarchy"><a href="https://build.fhir.org/ig/FHIR/ig-guidance/readingIgs.html#table-views" title="Le nom logique de lélément">Nom</a></th><th style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; padding-top: 3px; padding-bottom: 3px" class="hierarchy"><a href="https://build.fhir.org/ig/FHIR/ig-guidance/readingIgs.html#table-views" title="Information about the use of the element">Drapeaux</a></th><th style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; padding-top: 3px; padding-bottom: 3px" class="hierarchy"><a href="https://build.fhir.org/ig/FHIR/ig-guidance/readingIgs.html#table-views" title="Minimum and Maximum # of times the element can appear in the instance">Card.</a></th><th style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; padding-top: 3px; padding-bottom: 3px; width: 100px" class="hierarchy"><a href="https://build.fhir.org/ig/FHIR/ig-guidance/readingIgs.html#table-views" title="Reference to the type of the element">Type</a></th><th style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; padding-top: 3px; padding-bottom: 3px" class="hierarchy"><a href="https://build.fhir.org/ig/FHIR/ig-guidance/readingIgs.html#table-views" title="Additional information about the element">Description et contraintes</a><span style="float: right"><a href="https://build.fhir.org/ig/FHIR/ig-guidance/readingIgs.html#table-views" title="Legend for this format"><img src="data:image/png;base64, " alt="doco" style="background-color: inherit"/></a></span></th></tr><tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: white"><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck1.png)" class="hierarchy"><img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="icon_element.gif" alt="." style="background-color: white; background-color: inherit" title="Element" class="hierarchy"/> <a href="StructureDefinition-OMOPSpecimen-definitions.html#OMOPSpecimen" title="The specimen domain contains the records identifying biological samples from a person.">OMOPSpecimen</a><a name="OMOPSpecimen"> </a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><span style="opacity: 0.5">0</span><span style="opacity: 0.5">..</span><span style="opacity: 0.5">*</span></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><a href="http://build.fhir.org/types.html#Base">Base</a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">Specimen OMOP Table<br/><span style="font-weight:bold">Instances of this logical model can be the target of a Reference</span></td></tr>
    <tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: #F7F7F7"><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck10.png)" class="hierarchy"><img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="tbl_vjoin.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="icon_primitive.png" alt="." style="background-color: #F7F7F7; background-color: inherit" title="Type de donnée primitif" class="hierarchy"/> <a href="StructureDefinition-OMOPSpecimen-definitions.html#OMOPSpecimen.specimen-id" title="Specimen Identifier">specimen_id</a><a name="OMOPSpecimen.specimen_id"> </a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">1..1</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><a href="http://hl7.org/fhir/R4/datatypes.html#integer">integer</a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">Specimen Identifier</td></tr>
    <tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: white"><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck10.png)" class="hierarchy"><img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="tbl_vjoin.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="icon_reference.png" alt="." style="background-color: white; background-color: inherit" title="Reference to another Resource" class="hierarchy"/> <a href="StructureDefinition-OMOPSpecimen-definitions.html#OMOPSpecimen.person-id" title="The person from whom the specimen is collected.">person_id</a><a name="OMOPSpecimen.person_id"> </a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">1..1</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><a href="http://hl7.org/fhir/R4/references.html">Reference</a>(<a href="StructureDefinition-OMOPPerson.html">Person OMOP Table</a>)</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">Person</td></tr>
    <tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: #F7F7F7"><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck10.png)" class="hierarchy"><img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="tbl_vjoin.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="icon_reference.png" alt="." style="background-color: #F7F7F7; background-color: inherit" title="Reference to another Resource" class="hierarchy"/> <a href="StructureDefinition-OMOPSpecimen-definitions.html#OMOPSpecimen.specimen-concept-id" title="Specimen">specimen_concept_id</a><a name="OMOPSpecimen.specimen_concept_id"> </a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">1..1</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><a href="http://hl7.org/fhir/R4/references.html">Reference</a>(<a href="StructureDefinition-OMOPConcept.html">Concept OMOP Table</a>)</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">Specimen</td></tr>
    <tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: white"><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck10.png)" class="hierarchy"><img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="tbl_vjoin.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="icon_reference.png" alt="." style="background-color: white; background-color: inherit" title="Reference to another Resource" class="hierarchy"/> <a href="StructureDefinition-OMOPSpecimen-definitions.html#OMOPSpecimen.specimen-type-concept-id" title="Specimen Type">specimen_type_concept_id</a><a name="OMOPSpecimen.specimen_type_concept_id"> </a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">1..1</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><a href="http://hl7.org/fhir/R4/references.html">Reference</a>(<a href="StructureDefinition-OMOPConcept.html">Concept OMOP Table</a>)</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">Specimen Type</td></tr>
    <tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: #F7F7F7"><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck10.png)" class="hierarchy"><img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="tbl_vjoin.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="icon_primitive.png" alt="." style="background-color: #F7F7F7; background-color: inherit" title="Type de donnée primitif" class="hierarchy"/> <a href="StructureDefinition-OMOPSpecimen-definitions.html#OMOPSpecimen.specimen-date" title="The date the specimen was collected.">specimen_date</a><a name="OMOPSpecimen.specimen_date"> </a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">1..1</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><a href="http://hl7.org/fhir/R4/datatypes.html#date">date</a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">Specimen Date</td></tr>
    <tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: white"><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck10.png)" class="hierarchy"><img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="tbl_vjoin.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="icon_primitive.png" alt="." style="background-color: white; background-color: inherit" title="Type de donnée primitif" class="hierarchy"/> <a href="StructureDefinition-OMOPSpecimen-definitions.html#OMOPSpecimen.specimen-datetime" title="Specimen Datetime">specimen_datetime</a><a name="OMOPSpecimen.specimen_datetime"> </a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">0..1</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><a href="http://hl7.org/fhir/R4/datatypes.html#dateTime">dateTime</a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">Specimen Datetime</td></tr>
    <tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: #F7F7F7"><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck10.png)" class="hierarchy"><img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="tbl_vjoin.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="icon_primitive.png" alt="." style="background-color: #F7F7F7; background-color: inherit" title="Type de donnée primitif" class="hierarchy"/> <a href="StructureDefinition-OMOPSpecimen-definitions.html#OMOPSpecimen.quantity" title="The amount of specimen collected from the person.">quantity</a><a name="OMOPSpecimen.quantity"> </a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">0..1</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><a href="http://hl7.org/fhir/R4/datatypes.html#integer">integer</a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">Quantity</td></tr>
    <tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: white"><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck10.png)" class="hierarchy"><img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="tbl_vjoin.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="icon_reference.png" alt="." style="background-color: white; background-color: inherit" title="Reference to another Resource" class="hierarchy"/> <a href="StructureDefinition-OMOPSpecimen-definitions.html#OMOPSpecimen.unit-concept-id" title="The unit for the quantity of the specimen.">unit_concept_id</a><a name="OMOPSpecimen.unit_concept_id"> </a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">0..1</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><a href="http://hl7.org/fhir/R4/references.html">Reference</a>(<a href="StructureDefinition-OMOPConcept.html">Concept OMOP Table</a>)</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">Unit</td></tr>
    <tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: #F7F7F7"><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck10.png)" class="hierarchy"><img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="tbl_vjoin.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="icon_reference.png" alt="." style="background-color: #F7F7F7; background-color: inherit" title="Reference to another Resource" class="hierarchy"/> <a href="StructureDefinition-OMOPSpecimen-definitions.html#OMOPSpecimen.anatomic-site-concept-id" title="This is the site on the body where the specimen is from.">anatomic_site_concept_id</a><a name="OMOPSpecimen.anatomic_site_concept_id"> </a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">0..1</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><a href="http://hl7.org/fhir/R4/references.html">Reference</a>(<a href="StructureDefinition-OMOPConcept.html">Concept OMOP Table</a>)</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">Anatomic Site</td></tr>
    <tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: white"><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck10.png)" class="hierarchy"><img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="tbl_vjoin.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="icon_reference.png" alt="." style="background-color: white; background-color: inherit" title="Reference to another Resource" class="hierarchy"/> <a href="StructureDefinition-OMOPSpecimen-definitions.html#OMOPSpecimen.disease-status-concept-id" title="Disease Status">disease_status_concept_id</a><a name="OMOPSpecimen.disease_status_concept_id"> </a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">0..1</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><a href="http://hl7.org/fhir/R4/references.html">Reference</a>(<a href="StructureDefinition-OMOPConcept.html">Concept OMOP Table</a>)</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">Disease Status</td></tr>
    <tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: #F7F7F7"><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck10.png)" class="hierarchy"><img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="tbl_vjoin.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="icon_primitive.png" alt="." style="background-color: #F7F7F7; background-color: inherit" title="Type de donnée primitif" class="hierarchy"/> <a href="StructureDefinition-OMOPSpecimen-definitions.html#OMOPSpecimen.specimen-source-id" title="This is the identifier for the specimen from the source system.">specimen_source_id</a><a name="OMOPSpecimen.specimen_source_id"> </a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">0..1</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><a href="http://hl7.org/fhir/R4/datatypes.html#string">string</a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">Specimen Source</td></tr>
    <tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: white"><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck10.png)" class="hierarchy"><img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="tbl_vjoin.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="icon_primitive.png" alt="." style="background-color: white; background-color: inherit" title="Type de donnée primitif" class="hierarchy"/> <a href="StructureDefinition-OMOPSpecimen-definitions.html#OMOPSpecimen.specimen-source-value" title="Specimen Source Value">specimen_source_value</a><a name="OMOPSpecimen.specimen_source_value"> </a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">0..1</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><a href="http://hl7.org/fhir/R4/datatypes.html#string">string</a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">Specimen Source Value</td></tr>
    <tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: #F7F7F7"><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck10.png)" class="hierarchy"><img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="tbl_vjoin.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="icon_primitive.png" alt="." style="background-color: #F7F7F7; background-color: inherit" title="Type de donnée primitif" class="hierarchy"/> <a href="StructureDefinition-OMOPSpecimen-definitions.html#OMOPSpecimen.unit-source-value" title="Unit Source Value">unit_source_value</a><a name="OMOPSpecimen.unit_source_value"> </a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">0..1</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><a href="http://hl7.org/fhir/R4/datatypes.html#string">string</a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">Unit Source Value</td></tr>
    <tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: white"><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck10.png)" class="hierarchy"><img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="tbl_vjoin.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="icon_primitive.png" alt="." style="background-color: white; background-color: inherit" title="Type de donnée primitif" class="hierarchy"/> <a href="StructureDefinition-OMOPSpecimen-definitions.html#OMOPSpecimen.anatomic-site-source-value" title="Anatomic Site Source Value">anatomic_site_source_value</a><a name="OMOPSpecimen.anatomic_site_source_value"> </a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">0..1</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><a href="http://hl7.org/fhir/R4/datatypes.html#string">string</a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: white; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">Anatomic Site Source Value</td></tr>
    <tr style="border: 0px #F0F0F0 solid; padding:0px; vertical-align: top; background-color: #F7F7F7"><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px; white-space: nowrap; background-image: url(tbl_bck00.png)" class="hierarchy"><img src="tbl_spacer.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="tbl_vjoin_end.png" alt="." style="background-color: inherit" class="hierarchy"/><img src="icon_primitive.png" alt="." style="background-color: #F7F7F7; background-color: inherit" title="Type de donnée primitif" class="hierarchy"/> <a href="StructureDefinition-OMOPSpecimen-definitions.html#OMOPSpecimen.disease-status-source-value" title="Disease Site Source Value">disease_status_source_value</a><a name="OMOPSpecimen.disease_status_source_value"> </a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"/><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">0..1</td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy"><a href="http://hl7.org/fhir/R4/datatypes.html#string">string</a></td><td style="vertical-align: top; text-align : var(--ig-left,left); background-color: #F7F7F7; border: 0px #F0F0F0 solid; padding:0px 4px 0px 4px" class="hierarchy">Disease Site Source Value</td></tr>
    <tr><td colspan="5" class="hierarchy"><br/><a href="https://build.fhir.org/ig/FHIR/ig-guidance/readingIgs.html#table-views" title="Legend for this format"><img src="data:image/png;base64, " alt="doco" style="background-color: inherit"/> Documentation for this format</a></td></tr></table></div>
      </text>
      <extension
                 url="http://hl7.org/fhir/StructureDefinition/structuredefinition-type-characteristics">
        <valueCode value="can-be-target"/>
      </extension>
      <url
           value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPSpecimen"/>
      <version value="0.1.0"/>
      <name value="OMOPSpecimen"/>
      <title value="Specimen OMOP Table"/>
      <status value="draft"/>
      <date value="2025-10-23T20:49:03+00:00"/>
      <publisher value="AP-HP"/>
      <contact>
        <name value="AP-HP"/>
        <telecom>
          <system value="url"/>
          <value value="https://aphp.fr"/>
        </telecom>
      </contact>
      <description
                   value="The specimen domain contains the records identifying biological samples from a person."/>
      <jurisdiction>
        <coding>
          <system value="urn:iso:std:iso:3166"/>
          <code value="FR"/>
          <display value="France"/>
        </coding>
      </jurisdiction>
      <fhirVersion value="4.0.1"/>
      <kind value="logical"/>
      <abstract value="false"/>
      <type
            value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPSpecimen"/>
      <baseDefinition value="http://hl7.org/fhir/StructureDefinition/Base"/>
      <derivation value="specialization"/>
      <snapshot>
        <extension
                   url="http://hl7.org/fhir/tools/StructureDefinition/snapshot-base-version">
          <valueString value="4.0.1"/>
        </extension>
        <element id="OMOPSpecimen">
          <path value="OMOPSpecimen"/>
          <short value="Specimen OMOP Table"/>
          <definition
                      value="The specimen domain contains the records identifying biological samples from a person."/>
          <min value="0"/>
          <max value="*"/>
          <base>
            <path value="Base"/>
            <min value="0"/>
            <max value="*"/>
          </base>
          <isModifier value="false"/>
        </element>
        <element id="OMOPSpecimen.specimen-id">
          <path value="OMOPSpecimen.specimen_id"/>
          <short value="Specimen Identifier"/>
          <definition value="Specimen Identifier"/>
          <min value="1"/>
          <max value="1"/>
          <base>
            <path value="OMOPSpecimen.specimen_id"/>
            <min value="1"/>
            <max value="1"/>
          </base>
          <type>
            <code value="integer"/>
          </type>
        </element>
        <element id="OMOPSpecimen.person-id">
          <path value="OMOPSpecimen.person_id"/>
          <short value="Person"/>
          <definition value="The person from whom the specimen is collected."/>
          <min value="1"/>
          <max value="1"/>
          <base>
            <path value="OMOPSpecimen.person_id"/>
            <min value="1"/>
            <max value="1"/>
          </base>
          <type>
            <code value="Reference"/>
            <targetProfile
                           value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPPerson"/>
          </type>
        </element>
        <element id="OMOPSpecimen.specimen-concept-id">
          <path value="OMOPSpecimen.specimen_concept_id"/>
          <short value="Specimen"/>
          <definition value="Specimen"/>
          <min value="1"/>
          <max value="1"/>
          <base>
            <path value="OMOPSpecimen.specimen_concept_id"/>
            <min value="1"/>
            <max value="1"/>
          </base>
          <type>
            <code value="Reference"/>
            <targetProfile
                           value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept"/>
          </type>
        </element>
        <element id="OMOPSpecimen.specimen-type-concept-id">
          <path value="OMOPSpecimen.specimen_type_concept_id"/>
          <short value="Specimen Type"/>
          <definition value="Specimen Type"/>
          <min value="1"/>
          <max value="1"/>
          <base>
            <path value="OMOPSpecimen.specimen_type_concept_id"/>
            <min value="1"/>
            <max value="1"/>
          </base>
          <type>
            <code value="Reference"/>
            <targetProfile
                           value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept"/>
          </type>
        </element>
        <element id="OMOPSpecimen.specimen-date">
          <path value="OMOPSpecimen.specimen_date"/>
          <short value="Specimen Date"/>
          <definition value="The date the specimen was collected."/>
          <min value="1"/>
          <max value="1"/>
          <base>
            <path value="OMOPSpecimen.specimen_date"/>
            <min value="1"/>
            <max value="1"/>
          </base>
          <type>
            <code value="date"/>
          </type>
        </element>
        <element id="OMOPSpecimen.specimen-datetime">
          <path value="OMOPSpecimen.specimen_datetime"/>
          <short value="Specimen Datetime"/>
          <definition value="Specimen Datetime"/>
          <min value="0"/>
          <max value="1"/>
          <base>
            <path value="OMOPSpecimen.specimen_datetime"/>
            <min value="0"/>
            <max value="1"/>
          </base>
          <type>
            <code value="dateTime"/>
          </type>
        </element>
        <element id="OMOPSpecimen.quantity">
          <path value="OMOPSpecimen.quantity"/>
          <short value="Quantity"/>
          <definition value="The amount of specimen collected from the person."/>
          <min value="0"/>
          <max value="1"/>
          <base>
            <path value="OMOPSpecimen.quantity"/>
            <min value="0"/>
            <max value="1"/>
          </base>
          <type>
            <code value="integer"/>
          </type>
        </element>
        <element id="OMOPSpecimen.unit-concept-id">
          <path value="OMOPSpecimen.unit_concept_id"/>
          <short value="Unit"/>
          <definition value="The unit for the quantity of the specimen."/>
          <min value="0"/>
          <max value="1"/>
          <base>
            <path value="OMOPSpecimen.unit_concept_id"/>
            <min value="0"/>
            <max value="1"/>
          </base>
          <type>
            <code value="Reference"/>
            <targetProfile
                           value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept"/>
          </type>
        </element>
        <element id="OMOPSpecimen.anatomic-site-concept-id">
          <path value="OMOPSpecimen.anatomic_site_concept_id"/>
          <short value="Anatomic Site"/>
          <definition
                      value="This is the site on the body where the specimen is from."/>
          <min value="0"/>
          <max value="1"/>
          <base>
            <path value="OMOPSpecimen.anatomic_site_concept_id"/>
            <min value="0"/>
            <max value="1"/>
          </base>
          <type>
            <code value="Reference"/>
            <targetProfile
                           value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept"/>
          </type>
        </element>
        <element id="OMOPSpecimen.disease-status-concept-id">
          <path value="OMOPSpecimen.disease_status_concept_id"/>
          <short value="Disease Status"/>
          <definition value="Disease Status"/>
          <min value="0"/>
          <max value="1"/>
          <base>
            <path value="OMOPSpecimen.disease_status_concept_id"/>
            <min value="0"/>
            <max value="1"/>
          </base>
          <type>
            <code value="Reference"/>
            <targetProfile
                           value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept"/>
          </type>
        </element>
        <element id="OMOPSpecimen.specimen-source-id">
          <path value="OMOPSpecimen.specimen_source_id"/>
          <short value="Specimen Source"/>
          <definition
                      value="This is the identifier for the specimen from the source system."/>
          <min value="0"/>
          <max value="1"/>
          <base>
            <path value="OMOPSpecimen.specimen_source_id"/>
            <min value="0"/>
            <max value="1"/>
          </base>
          <type>
            <code value="string"/>
          </type>
        </element>
        <element id="OMOPSpecimen.specimen-source-value">
          <path value="OMOPSpecimen.specimen_source_value"/>
          <short value="Specimen Source Value"/>
          <definition value="Specimen Source Value"/>
          <min value="0"/>
          <max value="1"/>
          <base>
            <path value="OMOPSpecimen.specimen_source_value"/>
            <min value="0"/>
            <max value="1"/>
          </base>
          <type>
            <code value="string"/>
          </type>
        </element>
        <element id="OMOPSpecimen.unit-source-value">
          <path value="OMOPSpecimen.unit_source_value"/>
          <short value="Unit Source Value"/>
          <definition value="Unit Source Value"/>
          <min value="0"/>
          <max value="1"/>
          <base>
            <path value="OMOPSpecimen.unit_source_value"/>
            <min value="0"/>
            <max value="1"/>
          </base>
          <type>
            <code value="string"/>
          </type>
        </element>
        <element id="OMOPSpecimen.anatomic-site-source-value">
          <path value="OMOPSpecimen.anatomic_site_source_value"/>
          <short value="Anatomic Site Source Value"/>
          <definition value="Anatomic Site Source Value"/>
          <min value="0"/>
          <max value="1"/>
          <base>
            <path value="OMOPSpecimen.anatomic_site_source_value"/>
            <min value="0"/>
            <max value="1"/>
          </base>
          <type>
            <code value="string"/>
          </type>
        </element>
        <element id="OMOPSpecimen.disease-status-source-value">
          <path value="OMOPSpecimen.disease_status_source_value"/>
          <short value="Disease Site Source Value"/>
          <definition value="Disease Site Source Value"/>
          <min value="0"/>
          <max value="1"/>
          <base>
            <path value="OMOPSpecimen.disease_status_source_value"/>
            <min value="0"/>
            <max value="1"/>
          </base>
          <type>
            <code value="string"/>
          </type>
        </element>
      </snapshot>
      <differential>
        <element id="OMOPSpecimen">
          <path value="OMOPSpecimen"/>
          <short value="Specimen OMOP Table"/>
          <definition
                      value="The specimen domain contains the records identifying biological samples from a person."/>
        </element>
        <element id="OMOPSpecimen.specimen-id">
          <path value="OMOPSpecimen.specimen_id"/>
          <short value="Specimen Identifier"/>
          <definition value="Specimen Identifier"/>
          <min value="1"/>
          <max value="1"/>
          <type>
            <code value="integer"/>
          </type>
        </element>
        <element id="OMOPSpecimen.person-id">
          <path value="OMOPSpecimen.person_id"/>
          <short value="Person"/>
          <definition value="The person from whom the specimen is collected."/>
          <min value="1"/>
          <max value="1"/>
          <type>
            <code value="Reference"/>
            <targetProfile
                           value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPPerson"/>
          </type>
        </element>
        <element id="OMOPSpecimen.specimen-concept-id">
          <path value="OMOPSpecimen.specimen_concept_id"/>
          <short value="Specimen"/>
          <definition value="Specimen"/>
          <min value="1"/>
          <max value="1"/>
          <type>
            <code value="Reference"/>
            <targetProfile
                           value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept"/>
          </type>
        </element>
        <element id="OMOPSpecimen.specimen-type-concept-id">
          <path value="OMOPSpecimen.specimen_type_concept_id"/>
          <short value="Specimen Type"/>
          <definition value="Specimen Type"/>
          <min value="1"/>
          <max value="1"/>
          <type>
            <code value="Reference"/>
            <targetProfile
                           value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept"/>
          </type>
        </element>
        <element id="OMOPSpecimen.specimen-date">
          <path value="OMOPSpecimen.specimen_date"/>
          <short value="Specimen Date"/>
          <definition value="The date the specimen was collected."/>
          <min value="1"/>
          <max value="1"/>
          <type>
            <code value="date"/>
          </type>
        </element>
        <element id="OMOPSpecimen.specimen-datetime">
          <path value="OMOPSpecimen.specimen_datetime"/>
          <short value="Specimen Datetime"/>
          <definition value="Specimen Datetime"/>
          <min value="0"/>
          <max value="1"/>
          <type>
            <code value="dateTime"/>
          </type>
        </element>
        <element id="OMOPSpecimen.quantity">
          <path value="OMOPSpecimen.quantity"/>
          <short value="Quantity"/>
          <definition value="The amount of specimen collected from the person."/>
          <min value="0"/>
          <max value="1"/>
          <type>
            <code value="integer"/>
          </type>
        </element>
        <element id="OMOPSpecimen.unit-concept-id">
          <path value="OMOPSpecimen.unit_concept_id"/>
          <short value="Unit"/>
          <definition value="The unit for the quantity of the specimen."/>
          <min value="0"/>
          <max value="1"/>
          <type>
            <code value="Reference"/>
            <targetProfile
                           value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept"/>
          </type>
        </element>
        <element id="OMOPSpecimen.anatomic-site-concept-id">
          <path value="OMOPSpecimen.anatomic_site_concept_id"/>
          <short value="Anatomic Site"/>
          <definition
                      value="This is the site on the body where the specimen is from."/>
          <min value="0"/>
          <max value="1"/>
          <type>
            <code value="Reference"/>
            <targetProfile
                           value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept"/>
          </type>
        </element>
        <element id="OMOPSpecimen.disease-status-concept-id">
          <path value="OMOPSpecimen.disease_status_concept_id"/>
          <short value="Disease Status"/>
          <definition value="Disease Status"/>
          <min value="0"/>
          <max value="1"/>
          <type>
            <code value="Reference"/>
            <targetProfile
                           value="https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept"/>
          </type>
        </element>
        <element id="OMOPSpecimen.specimen-source-id">
          <path value="OMOPSpecimen.specimen_source_id"/>
          <short value="Specimen Source"/>
          <definition
                      value="This is the identifier for the specimen from the source system."/>
          <min value="0"/>
          <max value="1"/>
          <type>
            <code value="string"/>
          </type>
        </element>
        <element id="OMOPSpecimen.specimen-source-value">
          <path value="OMOPSpecimen.specimen_source_value"/>
          <short value="Specimen Source Value"/>
          <definition value="Specimen Source Value"/>
          <min value="0"/>
          <max value="1"/>
          <type>
            <code value="string"/>
          </type>
        </element>
        <element id="OMOPSpecimen.unit-source-value">
          <path value="OMOPSpecimen.unit_source_value"/>
          <short value="Unit Source Value"/>
          <definition value="Unit Source Value"/>
          <min value="0"/>
          <max value="1"/>
          <type>
            <code value="string"/>
          </type>
        </element>
        <element id="OMOPSpecimen.anatomic-site-source-value">
          <path value="OMOPSpecimen.anatomic_site_source_value"/>
          <short value="Anatomic Site Source Value"/>
          <definition value="Anatomic Site Source Value"/>
          <min value="0"/>
          <max value="1"/>
          <type>
            <code value="string"/>
          </type>
        </element>
        <element id="OMOPSpecimen.disease-status-source-value">
          <path value="OMOPSpecimen.disease_status_source_value"/>
          <short value="Disease Site Source Value"/>
          <definition value="Disease Site Source Value"/>
          <min value="0"/>
          <max value="1"/>
          <type>
            <code value="string"/>
          </type>
        </element>
      </differential>
    </StructureDefinition>