Data Management with FHIR
0.1.0 - ci-build

Data Management with FHIR - Local Development build (v0.1.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

## Logical Model: Specimen OMOP Table

Official URL: https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPSpecimen | Version: 0.1.0
Draft as of 2025-10-23 | Computable Name: OMOPSpecimen

The specimen domain contains the records identifying biological samples from a person.

Usages:

- This Logical Model is not used by any profiles in this Implementation Guide

You can also check for usages in the FHIR IG Statistics

### Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

- Key Elements Table
- Differential Table
- Snapshot Table
- Statistics/References
- All

Nom | Drapeaux | Card. | Type | Description et contraintes Filter: Bindings Constraints Obligations
--- | --- | --- | --- | ---
OMOPSpecimen |  | 0..* | Base | Specimen OMOP Table Instances of this logical model can be the target of a Reference
specimen_id |  | 1..1 | integer | Specimen Identifier
person_id |  | 1..1 | Reference(Person OMOP Table) | Person
specimen_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen
specimen_type_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen Type
specimen_date |  | 1..1 | date | Specimen Date
specimen_datetime |  | 0..1 | dateTime | Specimen Datetime
quantity |  | 0..1 | integer | Quantity
unit_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Unit
anatomic_site_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Anatomic Site
disease_status_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Disease Status
specimen_source_id |  | 0..1 | string | Specimen Source
specimen_source_value |  | 0..1 | string | Specimen Source Value
unit_source_value |  | 0..1 | string | Unit Source Value
anatomic_site_source_value |  | 0..1 | string | Anatomic Site Source Value
disease_status_source_value |  | 0..1 | string | Disease Site Source Value
Documentation for this format

This structure is derived from Base

Nom | Drapeaux | Card. | Type | Description et contraintes Filter: Bindings Constraints Obligations
--- | --- | --- | --- | ---
OMOPSpecimen |  | 0..* | Base | Specimen OMOP Table Instances of this logical model can be the target of a Reference
specimen_id |  | 1..1 | integer | Specimen Identifier
person_id |  | 1..1 | Reference(Person OMOP Table) | Person
specimen_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen
specimen_type_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen Type
specimen_date |  | 1..1 | date | Specimen Date
specimen_datetime |  | 0..1 | dateTime | Specimen Datetime
quantity |  | 0..1 | integer | Quantity
unit_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Unit
anatomic_site_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Anatomic Site
disease_status_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Disease Status
specimen_source_id |  | 0..1 | string | Specimen Source
specimen_source_value |  | 0..1 | string | Specimen Source Value
unit_source_value |  | 0..1 | string | Unit Source Value
anatomic_site_source_value |  | 0..1 | string | Anatomic Site Source Value
disease_status_source_value |  | 0..1 | string | Disease Site Source Value
Documentation for this format

Nom | Drapeaux | Card. | Type | Description et contraintes Filter: Bindings Constraints Obligations
--- | --- | --- | --- | ---
OMOPSpecimen |  | 0..* | Base | Specimen OMOP Table Instances of this logical model can be the target of a Reference
specimen_id |  | 1..1 | integer | Specimen Identifier
person_id |  | 1..1 | Reference(Person OMOP Table) | Person
specimen_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen
specimen_type_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen Type
specimen_date |  | 1..1 | date | Specimen Date
specimen_datetime |  | 0..1 | dateTime | Specimen Datetime
quantity |  | 0..1 | integer | Quantity
unit_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Unit
anatomic_site_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Anatomic Site
disease_status_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Disease Status
specimen_source_id |  | 0..1 | string | Specimen Source
specimen_source_value |  | 0..1 | string | Specimen Source Value
unit_source_value |  | 0..1 | string | Unit Source Value
anatomic_site_source_value |  | 0..1 | string | Anatomic Site Source Value
disease_status_source_value |  | 0..1 | string | Disease Site Source Value
Documentation for this format

This structure is derived from Base

Résumé

Mandatory: 0 element(5 nested mandatory elements)

Structures

This structure refers to these other structures:

- Person OMOP Table (https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPPerson)
- Concept OMOP Table (https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept)

Key Elements View

Nom | Drapeaux | Card. | Type | Description et contraintes Filter: Bindings Constraints Obligations
--- | --- | --- | --- | ---
OMOPSpecimen |  | 0..* | Base | Specimen OMOP Table Instances of this logical model can be the target of a Reference
specimen_id |  | 1..1 | integer | Specimen Identifier
person_id |  | 1..1 | Reference(Person OMOP Table) | Person
specimen_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen
specimen_type_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen Type
specimen_date |  | 1..1 | date | Specimen Date
specimen_datetime |  | 0..1 | dateTime | Specimen Datetime
quantity |  | 0..1 | integer | Quantity
unit_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Unit
anatomic_site_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Anatomic Site
disease_status_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Disease Status
specimen_source_id |  | 0..1 | string | Specimen Source
specimen_source_value |  | 0..1 | string | Specimen Source Value
unit_source_value |  | 0..1 | string | Unit Source Value
anatomic_site_source_value |  | 0..1 | string | Anatomic Site Source Value
disease_status_source_value |  | 0..1 | string | Disease Site Source Value
Documentation for this format

Differential View

This structure is derived from Base

Nom | Drapeaux | Card. | Type | Description et contraintes Filter: Bindings Constraints Obligations
--- | --- | --- | --- | ---
OMOPSpecimen |  | 0..* | Base | Specimen OMOP Table Instances of this logical model can be the target of a Reference
specimen_id |  | 1..1 | integer | Specimen Identifier
person_id |  | 1..1 | Reference(Person OMOP Table) | Person
specimen_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen
specimen_type_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen Type
specimen_date |  | 1..1 | date | Specimen Date
specimen_datetime |  | 0..1 | dateTime | Specimen Datetime
quantity |  | 0..1 | integer | Quantity
unit_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Unit
anatomic_site_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Anatomic Site
disease_status_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Disease Status
specimen_source_id |  | 0..1 | string | Specimen Source
specimen_source_value |  | 0..1 | string | Specimen Source Value
unit_source_value |  | 0..1 | string | Unit Source Value
anatomic_site_source_value |  | 0..1 | string | Anatomic Site Source Value
disease_status_source_value |  | 0..1 | string | Disease Site Source Value
Documentation for this format

Snapshot View

Nom | Drapeaux | Card. | Type | Description et contraintes Filter: Bindings Constraints Obligations
--- | --- | --- | --- | ---
OMOPSpecimen |  | 0..* | Base | Specimen OMOP Table Instances of this logical model can be the target of a Reference
specimen_id |  | 1..1 | integer | Specimen Identifier
person_id |  | 1..1 | Reference(Person OMOP Table) | Person
specimen_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen
specimen_type_concept_id |  | 1..1 | Reference(Concept OMOP Table) | Specimen Type
specimen_date |  | 1..1 | date | Specimen Date
specimen_datetime |  | 0..1 | dateTime | Specimen Datetime
quantity |  | 0..1 | integer | Quantity
unit_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Unit
anatomic_site_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Anatomic Site
disease_status_concept_id |  | 0..1 | Reference(Concept OMOP Table) | Disease Status
specimen_source_id |  | 0..1 | string | Specimen Source
specimen_source_value |  | 0..1 | string | Specimen Source Value
unit_source_value |  | 0..1 | string | Unit Source Value
anatomic_site_source_value |  | 0..1 | string | Anatomic Site Source Value
disease_status_source_value |  | 0..1 | string | Disease Site Source Value
Documentation for this format

This structure is derived from Base

Résumé

Mandatory: 0 element(5 nested mandatory elements)

Structures

This structure refers to these other structures:

- Person OMOP Table (https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPPerson)
- Concept OMOP Table (https://interop.aphp.fr/ig/fhir/dm/StructureDefinition/OMOPConcept)

Other representations of profile: CSV, Excel